BAC Information

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BAC

Clone NameMSMg01-102O04
Chromosome3 (Build37)
Map Location 77,663,103 - 77,663,314
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102O04.T7 (MSMg01no102_o04.b1)MSMg01-102O04.TJ (MSMg01no102_o04.g1)
ACCAG317909AG317910
length691688
length of high quality
(start - end)
211 (75 - 285)242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no102_o04.b1 PHD_FILE: MSMg01no102_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:37 2005CHROMAT_FILE: MSMg01no102_o04.g1 PHD_FILE: MSMg01no102_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAGAGGGCGGA
ATTCAATGTTTTCATGCTATCTCAGATAATTATTTACCACAATTCACTTA
GTAGGCTTGTAATTAAAGGCAAACATGTTTTATTCTTTTTTTTTTCTTCT
GGTATTTAATAATAGAAAATTTATTTTATTTTGAGTATCTTAACATTCTT
TGAAATACAGTTTTCAAAATATATAGTATGCAATTTTGTTTATAATACTT
GAAGAAAAATCTTGATAGAAAGTTTTGCATTGTATTACAACCTAGCAAAA
ACATACAATATATTTTATTATTATTATTTTACCTTTAGTCTTTTTTTTTT
TTTTTACAGACCATTTCCTACTCCCCTCCTGGTCAGGTCTCCTACAGTTC
CTCATCCCATTCTTCCTCCCCATCCATTCCCCCATCTCCAAGAGGATGTT
CCCAACTAGTCCTATTTCCAGCTTAGCCTGTCATGCTCCCCCATTCCCTG
GAGCCTAAAGTCCCTGGATGTCCATATGCCTGTTGCCTCATTGATGTCAT
ATTCCTTGAGCTTTTGCTGATATATGTGTTCGGGGCATTATGACAACATT
TTGTAATACTTCCTGTCTGGCGTCTCCCTCGCTTGATTTCTTTCTAGCTT
CCCGACCATGTTGACACCGATATTCCTTTTCAACGCCATCC
TTCGATGCTGTGGGAGGCCTGGNGGCCGCCTGGTTCAAACATGAGGTGAA
CTATAGAAGTTTCGCGGAATTCATAACTCACTTAAAGAGATACAGGAGAA
CACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTA
AAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTA
GAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAAT
GAACAAAACCGTACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAA
CCCAAAGTGAGGCATCGCTGTATATAGAAACCCTAGAGAAGAAATCTGGA
ACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAAT
CTCAGGTGCAGAAGACCCCACAGAGAACATCGGCACAACAATCAAAGAAA
ATGCATAATGCCAAAAGACCCCAACTAAACACATCAATGAAATCTAGGAC
ACAATGAGAAGACCAAACCTACAGACCTATAGGAGTGGATGACAATGAAA
ATTCTCATCTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAA
AACTTCCCTAACCTCCCTAAAGATCTATTCATGAACATACATCAAGCCTA
CCCAAACTCCTAATACACCGCACCAAAAAACACTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_o04.b1 MSMg01no102_o04.b1 CHROMAT_FILE:
MSMg01no102_o04.b1 PHD_FILE: MSMg01no102_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:37 2005
         (211 letters)



>mm_chr3_77662904_77663514
          Length = 611

 Score =  379 bits (196), Expect = e-110
 Identities = 208/212 (98%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataattatttaccacaattcacttagtaggcttgtaattaaaggcaaacatgttttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gataattatttaccacaattcacttagtaggcttgtaattaaaggcaaacatgttttatt 259

                                                                       
Query: 61  c-ttttttttttcttctggtatttaataatagaaaatttattttattttgagtatcttaa 119
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 ctttttttttttcttctggtattttataatagaaaatttattttattttgagtatcttaa 319

                                                                       
Query: 120 cattctttgaaatacagttttcaaaatatatagtatgcaattttgtttataatacttgaa 179
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 cattctttgaaaaacagttttcaaaatatatagtatgcaattttgtttagaatacttgaa 379

                                           
Query: 180 gaaaaatcttgatagaaagttttgcattgtat 211
           ||||||||||||||||||||||||||||||||
Sbjct: 380 gaaaaatcttgatagaaagttttgcattgtat 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)