BAC Information

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BAC

Clone NameMSMg01-103A01
Chromosome3 (Build37)
Map Location 157,958,026 - 157,958,318
singlet/doubletsinglet
Overlap geneLrrc7
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103A01.T7 (MSMg01no103_a01.b1)MSMg01-103A01.TJ (MSMg01no103_a01.g1)
ACCAG317994AG317995
length700720
length of high quality
(start - end)
296 (82 - 377)296 (73 - 368)
definitionCHROMAT_FILE: MSMg01no103_a01.b1 PHD_FILE: MSMg01no103_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:46 2005CHROMAT_FILE: MSMg01no103_a01.g1 PHD_FILE: MSMg01no103_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
GCGCGGAATTCTGTGTTTATTCCGGGTTGAACAAAGCAGGTGTTAGAGGG
AATGTAGGCAGAATATGCTGGCAACAGTCCCAGGAAATGCATGTTGAGCT
TTCAAGATCTCCACTGGACGCCGTCTCATGGGGATGCTTCAAGGGCATAA
AATTCTACAGAGCTGTAGACAAGGCAGATGAGGAAGTGAGCTATTTCACA
CCTGCTCCACGGAAACTAAGAATTGTTCCTAAGATATTCTGAGGCCCTGG
ATGAAGACACCATCCTGCAGAGGACTGTACAGAAAGCCATAGGCTGTGAG
TCAAGGTAGAAAGAGATGTATGAACACCACCCCAATGAATAGACATGTTT
TCCACAGAGGATAAAAATCAAAATCTGACTGTAATTCATCTTTGAAATTA
TCATTGTATTAATAAGAAGTAAAATGTACAAATATTTTATATTACCAAGT
TTATAAAAAGTGATATGAAAAAGAAAAACTGATGAGAACAGGAGTCAAGA
AGCATATAGAGAGGGGTTGGACAAAAGCTCAGCTTTAAGAGCATTGGCTG
CCCTGGCAGATGGCCCAGGCGTGGTTCTCAGTGACTACCATTTTTAACTC
TAGTTTTATGGAATAAAATGCCCTCTTCTGGTCTCTTAAGGCACTGAATT

CATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACTCAGCAAAGGAAACATTTAAATGAG
TGAAGAGACAGGCTAGAGAATGAGAAAAAAATTTTTCACCAGGTATATCT
GATAGCATATCTAAAATACTCAAGATCTAAATAACAAGAAATCAACCATG
TCAATGAAGAAACTAATGAAATGAACTGACCGTTCTCAGAATATGAAATG
GCCAATAAACAGATGAGGCTATTCACCTTCTCCACTCTCCAAGGAAGTGC
AAATTAAAACTATATTGGTAATCCATCTAACTCGAGTCAGAATGACAACT
ATTAAGACTAACAATATGGTCTGGAGAGATGGTTCAGTGGTTAAGAGCAC
CAGTTGCTTTTCCAGACGTCCTATGTTCAATTTTCAGCAATACCCACCCG
TACCTTCCCTAAGCCCCCTCTCTTTCCTACAAGCCCATGGTCCCTACACA
GTTTTGTTTTCATTTTCATGCCGCATATACATCCATGATTTCATGTGCTT
GACTATAAATTTACAACCCATAAATGAGAGGCCTTACTACACCCTATAAT
GAGCTCTGATGCCCTCTTTCTGCATGCTTGCGTTCATGCAGATAGAGCAC
CCATCCTTAACCCAATTTTCCTACCCAACAATACCACTATCTGCCCTTGA
TGATGTGGACCCAGGGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_a01.b1 MSMg01no103_a01.b1 CHROMAT_FILE:
MSMg01no103_a01.b1 PHD_FILE: MSMg01no103_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:46 2005
         (296 letters)



>mm_chr3_157957826_157958521
          Length = 696

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagcaggtgttagagggaatgtaggcagaatatgctggcaacagtcccaggaaatgca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaagcaggtgttagagtgaatgtaggcagaatatgctggcaacagtcccaggaaatgca 434

                                                                       
Query: 61  tgttgagctttcaagatctccactggacgccgtctcatggggatgcttcaagggcataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttgagctttcaagatctccactggacgccgtctcatggggatgcttcaagggcataaa 374

                                                                       
Query: 121 attctacagagctgtagacaaggcagatgaggaagtgagctatttcacacctgctccacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 attctacagagctgtagacaaggcagatgaggaagtgagctatttcacacctgctccacg 314

                                                                       
Query: 181 gaaactaagaattgttcctaagatattctgaggccctggatgaagacaccatcctgcaga 240
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 313 gaaactaagaattgctcctaagatattctgaggccctggatgaagacgccatcctgcaga 254

                                                                
Query: 241 ggactgtacagaaagccataggctgtgagtcaaggtagaaagagatgtatgaa 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggactgtacagaaagccataggctgtgagtcaaggtagaaagagatgtatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)