Query= MSMg01no103_c21.b1 MSMg01no103_c21.b1 CHROMAT_FILE:
MSMg01no103_c21.b1 PHD_FILE: MSMg01no103_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:01 2005
(563 letters)
>mm_chr3_113544489_113545451
Length = 963
Score = 1004 bits (519), Expect = 0.0
Identities = 552/567 (97%), Gaps = 9/567 (1%)
Strand = Plus / Plus
Query: 5 ggaattcactttatagatcacgctggccttgaactcagaaatctgcctgcctctgcttcc 64
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 196 ggaattcactttatagaccaggctggcctcgaactcagaaatctgcctgcctctgcttcc 255
Query: 65 caagtgctgggattaaaggcgtgcaacaccatgcccggcttggatgtatttttatattgt 124
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 256 caagtgctgggattaaaggtgtgcaacaccatgcccagcttggatgtatttttatattgt 315
Query: 125 taaaattacctccctacccttaaacttatagactcacctgaaagagttatttaaataatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taaaattacctccctacccttaaacttatagactcacctgaaagagttatttaaataatt 375
Query: 185 taagttaaatgcttgctaaggtttaacttga-ttttttttgtttgtttgtttttg----- 238
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 376 taagttaaatgcttgctaaggtttaacttgatttttttttgtttgtttgtttttgttttt 435
Query: 239 --ttttttgttttttgtttttg-ttttttgaaaattttagtactttaagacatcccgtag 295
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtttttttgttttttgtttttgtttttttgaaaattttagtactttaagacatcccgtag 495
Query: 296 cattatttttccactaatcagagcagaagacttagagctgatttccccaggaagtagtta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cattatttttccactaatcagagcagaagacttagagctgatttccccaggaagtagtta 555
Query: 356 gcccgtggaagtttctctgtcttcttattatgtagtcagaatgatattgctttgatcctc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gcccgtggaagtttctctgtcttcttattatgtagtcagaatgatattgctttgatcctc 615
Query: 416 agccatacagtagcaaacattttaatatttctttattagtcacctcttttttgccatgat 475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 616 agccatacagtagcaaacattttaatatgtctttattagtcacctcttttttgccatgat 675
Query: 476 caaacatttactcttttgctgaattatataacggaattatgcaggtatgttagattcatt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caaacatttactcttttgctgaattatataacggaattatgcaggtatgttagattcatt 735
Query: 536 tggatttttattgttacctttagacaa 562
|||||||||||||||||||||||||||
Sbjct: 736 tggatttttattgttacctttagacaa 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_c21.g1 MSMg01no103_c21.g1 CHROMAT_FILE:
MSMg01no103_c21.g1 PHD_FILE: MSMg01no103_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:01 2005
(516 letters)
>mm_chr3_113634553_113635468
Length = 916
Score = 909 bits (470), Expect = 0.0
Identities = 482/486 (99%)
Strand = Plus / Minus
Query: 31 taactaaatggttaagagcacttgatgcttttacagagaactgtggtttgtgtctcagca 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 taactaaatggttaagagcacttgatgcttttacagagaactgtggtttgtgtctcagca 857
Query: 91 cccacatggtggttcacaactgcttgtcccaacattctagaatatctaatgctttcttct 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cccacatggtggttcacaactgcttgtcccaacattctagaatatctaatgctttcttct 797
Query: 151 gaccatcacagacatcaggcatgcacaaaaagcacatacatacaaaaagatgatcatact 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaccatcacagacatcaggcatgcacaaaaagcacatacatacaaaaagatgatcatact 737
Query: 211 tcaaataaaataaatatgaataaatagatttttaaagcagatatcaagaactcaaatata 270
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 736 tcaaataaaataaatatgaataaatagatttttaaagcagacatcaagaactcaaatata 677
Query: 271 aagcagtagaaaataaaattcaacaatgttaaaaaaggataactactgttagaaaatgta 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 676 aagcagtagaaaataaaattcaacaatgttaaaaaaggataactactgttagaaaatata 617
Query: 331 tatggcatatatatgtatggtatacatttaatatgatataaagtgcttctaaaagccaat 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tatggcatatatatgtatggtatacatttaatatgatataaagtgcttctaaaagccaat 557
Query: 391 tatttaagcaatgtcaaacacttaggtacagtatgtaagaagaagacaaaaggaagcatt 450
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 556 tatttaagcaatgtcaaacactgaggtacagcatgtaagaagaagacaaaaggaagcatt 497
Query: 451 ttagaacaaatatgtgctcttcatgtgattggaagactttactaacaaacagaccaagag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttagaacaaatatgtgctcttcatgtgattggaagactttactaacaaacagaccaagag 437
Query: 511 gttgta 516
||||||
Sbjct: 436 gttgta 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
