BAC Information

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BAC

Clone NameMSMg01-103D03
Chromosome3 (Build37)
Map Location 77,204,452 - 77,342,104
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103D03.T7 (MSMg01no103_d03.b1)MSMg01-103D03.TJ (MSMg01no103_d03.g1)
ACCAG318128AG318129
length693710
length of high quality
(start - end)
609 (78 - 686)261 (64 - 324)
definitionCHROMAT_FILE: MSMg01no103_d03.b1 PHD_FILE: MSMg01no103_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:02 2005CHROMAT_FILE: MSMg01no103_d03.g1 PHD_FILE: MSMg01no103_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,204,452 - 77,205,060)(77,341,848 - 77,342,104)
sequence
TCGGNNGGTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTATTACGTAAACCAGCCACCTGACCTCCCAAGGGT
CCTCTCAAAGCTACCATTTCTCCAGTTTGGGATGTCCTGGCACTGCATTC
ACCCCAACCATGATTTGAAGCTAGATCCAAAGGGCATCTGCTTATAAACT
GAATGTACAAATCAGATATTATAAAATATTTTAAAATATTTTAGTATACT
CATAATTTACTATTTTGAAGATTAAAACAAATTTACGTGAAATTTTGTTG
CAAAAATAAACACTTGTTATTTTTAAAAGACTAGTAAACATTATGGATTG
ATGGATATTTTATAACATATGATCTGTATACATATAGGACTGACAATGTA
GTTGACATTTTGATTTTATACTGAATATTGAAAATTTCATGACACATAAA
CCTGTAGTAGAAAGTGGCAGATGTGTATTTCAGCTCATCATTGTAATTGT
TAGAGGTTCTATAACATTTCCCAGATAAATTCTTGAACAACTTTGTCAAA
CTTAAGTTAACTCAATGTGCAATATTTAAACAAAATGTTTTAGGACAGTA
CAATCCAATGATTGACTAACATGTACTTGCTATTAAATGATAGTGCATTA
TATGATAAGTCAAAACTCTGTGTTTCCTATAATTAAAGCATTG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTCCGAATTCACATCAATTAAACATCACATTTCAGA
ATACTGACTGATTAGAATTTGTTAAATGCCACAGAAAATGCATTTTGGCT
GACAGAAGATAATTAGCCCTGGAAAATTTGCCAACCTGGGATGGTAGAAA
TAAACAGTAGATGGAGGCTCATTCGAAAGGGTATGTGCCAATTTAAAACA
GATGCTTCTCACCGATGCTTGCATAGAGCTTCAATATTGCTGCTGCTTTG
CCTAAGGCACTGAGTGTTTTTTCCCATATTCTCTGTACGGTATCTACTCA
TGTAACATCATATTTATAACATATTATCTTCATCTACGTACCTCAGTCGT
TTAAACTAACTGAGAATGTTCACCAGACCCTATATTAACGCTATTACCCC
TATGTGAAACACAACATGGTACGACACCTCTTCTACGTTCCTCTTCCGGA
ACTAACTTGTTCCCTGGATGTCCTCCTTACATCATATTCTTATTCTCTAT
TTACCCAATGCTGATCAAGAACTGTGCCCAACATGTTCTACATAGTGAAG
TCTAGTATAGCCAGTGGCAAATCTTCCGTCTGACTCAATGTTAAGCATAG
TTCATTTTATTTATACCTATCACACTATATCCCATTCCAGTATTCCCCAA
CTCACATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_d03.b1 MSMg01no103_d03.b1 CHROMAT_FILE:
MSMg01no103_d03.b1 PHD_FILE: MSMg01no103_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:02 2005
         (609 letters)



>mm_chr3_77204252_77205260
          Length = 1009

 Score = 1108 bits (573), Expect = 0.0
 Identities = 600/609 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccacctgacctcccaagggtcctctcaaagctaccatttctccagtttgggatgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagccacctgacctcccaagggtcctctcaaagctaccatttctccagtttgggatgtcc 260

                                                                       
Query: 61  tggcactgcattcaccccaaccatgatttgaagctagatccaaagggcatctgcttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcactgcattcaccccaaccatgatttgaagctagatccaaagggcatctgcttataa 320

                                                                       
Query: 121 actgaatgtacaaatcagatattataaaatattttaaaatattttagtatactcataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaatgtacaaatcagatattataaaatattttaaaatattttagtatactcataatt 380

                                                                       
Query: 181 tactattttgaagattaaaacaaatttacgtgaaattttgttgcaaaaataaacacttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactattttgaagattaaaacaaatttacgtgaaattttgttgcaaaaataaacacttgt 440

                                                                       
Query: 241 tatttttaaaagactagtaaacattatggattgatggatattttataacatatgatctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttttaaaagactagtaaacattatggattgatggatattttataacatatgatctgt 500

                                                                       
Query: 301 atacatataggactgacaatgtagttgacattttgattttatactgaatattgaaaattt 360
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 atagatataggactgacaacgtagttgacattttgattttatactgaatattgaaaagtt 560

                                                                       
Query: 361 catgacacataaacctgtagtagaaagtggcagatgtgtatttcagctcatcattgtaat 420
           |||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 catgacacataaccctgtattggaaagtggcagatgtgtatttcagctcattattgtaat 620

                                                                       
Query: 421 tgttagaggttctataacatttcccagataaattcttgaacaactttgtcaaacttaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 tgttagaggttctataacatttcccagataaattcttgaacaactttgtcaaactgaagt 680

                                                                       
Query: 481 taactcaatgtgcaatatttaaacaaaatgttttaggacagtacaatccaatgattgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taactcaatgtgcaatatttaaacaaaatgttttaggacagtacaatccaatgattgact 740

                                                                       
Query: 541 aacatgtacttgctattaaatgatagtgcattatatgataagtcaaaactctgtgtttcc 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 aacatgtacttgctattaaatgatagtgcattatatgagaagtcaaaactctgtgtttcc 800

                    
Query: 601 tataattaa 609
           |||||||||
Sbjct: 801 tataattaa 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no103_d03.g1 MSMg01no103_d03.g1 CHROMAT_FILE:
MSMg01no103_d03.g1 PHD_FILE: MSMg01no103_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:02 2005
         (261 letters)



>mm_chr3_77341643_77342304
          Length = 662

 Score =  482 bits (249), Expect = e-140
 Identities = 255/257 (99%), Gaps = 1/257 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacatcaattaaacatcacatttcagaatactgactgattagaatttgttaaatg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcacatcaattaaacatcacatttcagaatactgactgattagaatttgttaaatg 403

                                                                       
Query: 66  ccacagaaaatgcattttggctgacagaagataattagccctgg-aaaatttgccaacct 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 402 ccacagaaaatgcattttggctgacagaagataattagccctggaaaaatttgccaacct 343

                                                                       
Query: 125 gggatggtagaaataaacagtagatggaggctcattcgaaagggtatgtgccaatttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gggatggtagaaataaacagtagatggaggctcattcgaaagggtatgtgccaatttaaa 283

                                                                       
Query: 185 acagatgcttctcaccgatgcttgcatagagcttcaatattgctgctgctttgcctaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acagatgcttctcaccgatgcttgcatagagcttcaatattgctgctgctttgcctaagg 223

                            
Query: 245 cactgagtgttttttcc 261
           ||| |||||||||||||
Sbjct: 222 caccgagtgttttttcc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 662
Length adjustment: 9
Effective length of query: 252
Effective length of database: 653
Effective search space:   164556
Effective search space used:   164556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)