Query= MSMg01no103_d03.b1 MSMg01no103_d03.b1 CHROMAT_FILE:
MSMg01no103_d03.b1 PHD_FILE: MSMg01no103_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:02 2005
(609 letters)
>mm_chr3_77204252_77205260
Length = 1009
Score = 1108 bits (573), Expect = 0.0
Identities = 600/609 (98%)
Strand = Plus / Plus
Query: 1 cagccacctgacctcccaagggtcctctcaaagctaccatttctccagtttgggatgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagccacctgacctcccaagggtcctctcaaagctaccatttctccagtttgggatgtcc 260
Query: 61 tggcactgcattcaccccaaccatgatttgaagctagatccaaagggcatctgcttataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcactgcattcaccccaaccatgatttgaagctagatccaaagggcatctgcttataa 320
Query: 121 actgaatgtacaaatcagatattataaaatattttaaaatattttagtatactcataatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaatgtacaaatcagatattataaaatattttaaaatattttagtatactcataatt 380
Query: 181 tactattttgaagattaaaacaaatttacgtgaaattttgttgcaaaaataaacacttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactattttgaagattaaaacaaatttacgtgaaattttgttgcaaaaataaacacttgt 440
Query: 241 tatttttaaaagactagtaaacattatggattgatggatattttataacatatgatctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttttaaaagactagtaaacattatggattgatggatattttataacatatgatctgt 500
Query: 301 atacatataggactgacaatgtagttgacattttgattttatactgaatattgaaaattt 360
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 atagatataggactgacaacgtagttgacattttgattttatactgaatattgaaaagtt 560
Query: 361 catgacacataaacctgtagtagaaagtggcagatgtgtatttcagctcatcattgtaat 420
|||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 catgacacataaccctgtattggaaagtggcagatgtgtatttcagctcattattgtaat 620
Query: 421 tgttagaggttctataacatttcccagataaattcttgaacaactttgtcaaacttaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 tgttagaggttctataacatttcccagataaattcttgaacaactttgtcaaactgaagt 680
Query: 481 taactcaatgtgcaatatttaaacaaaatgttttaggacagtacaatccaatgattgact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taactcaatgtgcaatatttaaacaaaatgttttaggacagtacaatccaatgattgact 740
Query: 541 aacatgtacttgctattaaatgatagtgcattatatgataagtcaaaactctgtgtttcc 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 aacatgtacttgctattaaatgatagtgcattatatgagaagtcaaaactctgtgtttcc 800
Query: 601 tataattaa 609
|||||||||
Sbjct: 801 tataattaa 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_d03.g1 MSMg01no103_d03.g1 CHROMAT_FILE:
MSMg01no103_d03.g1 PHD_FILE: MSMg01no103_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:02 2005
(261 letters)
>mm_chr3_77341643_77342304
Length = 662
Score = 482 bits (249), Expect = e-140
Identities = 255/257 (99%), Gaps = 1/257 (0%)
Strand = Plus / Minus
Query: 6 gaattcacatcaattaaacatcacatttcagaatactgactgattagaatttgttaaatg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcacatcaattaaacatcacatttcagaatactgactgattagaatttgttaaatg 403
Query: 66 ccacagaaaatgcattttggctgacagaagataattagccctgg-aaaatttgccaacct 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 402 ccacagaaaatgcattttggctgacagaagataattagccctggaaaaatttgccaacct 343
Query: 125 gggatggtagaaataaacagtagatggaggctcattcgaaagggtatgtgccaatttaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gggatggtagaaataaacagtagatggaggctcattcgaaagggtatgtgccaatttaaa 283
Query: 185 acagatgcttctcaccgatgcttgcatagagcttcaatattgctgctgctttgcctaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acagatgcttctcaccgatgcttgcatagagcttcaatattgctgctgctttgcctaagg 223
Query: 245 cactgagtgttttttcc 261
||| |||||||||||||
Sbjct: 222 caccgagtgttttttcc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 662
Length adjustment: 9
Effective length of query: 252
Effective length of database: 653
Effective search space: 164556
Effective search space used: 164556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|