BAC Information

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BAC

Clone NameMSMg01-103D14
Chromosome3 (Build37)
Map Location 53,892,742 - 53,892,946
singlet/doubletsinglet
Overlap geneLOC100039937
Upstream geneLhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444
Downstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103D14.T7 (MSMg01no103_d14.b1)MSMg01-103D14.TJ (MSMg01no103_d14.g1)
ACCAG318148AG318149
length782730
length of high quality
(start - end)
---205 (80 - 284)
definitionCHROMAT_FILE: MSMg01no103_d14.b1 PHD_FILE: MSMg01no103_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:04 2005CHROMAT_FILE: MSMg01no103_d14.g1 PHD_FILE: MSMg01no103_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAAATCAATCGATCAAAAATTGCGGACGCTATACGATTACTATAGTT
CGAAAATAGGCGGAATTCTCAGCTTCTTTCCAACAAGAGTGATTGGATGA
TGTCATTTTTACTAGCATGGTGAGAAACGATTAAGTCTTTGCATCTGTAA
TCCATTTCCGATTCAAATGTTTTCCTTTATAATAGTTGCCATGGTATTGA
TGTTTCTTCACAGTGAGAAAACTCATACTACTTTACCTTCTCGTTCAAAA
ATTAGTATAATACAACGTAACTACAGCTTTTACTTCGACTCTGACAATAG
TTTAGACCACAGAAACTATTTTATTAAACGACAGATTTTTTTTTTTTACA
TTAAGACTAAAACATCCATATTTAACTGTTTATGTTATTCGCACCCCCAA
TGTCATTATATCTTTCGTATTCAACATTTTTATTTCCCCCCCAGTTTGTT
AACCTTTACACTATTTTCTCTCGTCCCCTTTTCTCCCTCCTTTTTTATTA
CTCTCTACTACTTATTATTTTACCCTACCTCATTTTATTACCCTATAACC
CGTTTTCCACTTTGAACCTAATCTTTACCTAAATTCATATCCCTAATAAT
ATACCCATCTCTATACTACACCTCAAAATAATTAACAATAAAAAACAAAT
CATATTATTATTTATCCTTCTATTTTCTTTATTTTTTACCGCTATTTACA
TTTACCAATTTATATATCACCAATTATTCCTATACGATTTCCTATCCAAA
TATTGACTGTATTTTATCCTATTTATTTATTA
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATGGTCAGAAATCACCACAAAACCC
ATAGCAAAACGTCTAATATCTTCTATGTTGAGATCTGGGCACAGGAGGAA
GCAGCAAGAGCCTGAGGGAACAGCGAGGCTCTGAAGTACATCCTCTTCAT
AGACCCTGTTACCTGTTCTGGAACAGCACTGGCCAGCGACAGGATCATTG
GCTAGAACAGGATTGCACAGGATCTGTCCCAGGTTTACGGTAAGATTTTT
CAGTTGCAGAGATTCACCTGGGTCTAATCTTGTTGTTGATGTTCCAACCT
TGTGTTTTTTTTTTTTTGCCTCTTCGCTTTTGCTTTCGTTTTGTTTCCGG
TTTCTTGGTCGCTTCCTCCCCCCCCTTTTTTTTTCCTTTTCCCTCCCCCC
TTTTTTTTTTTCTCTCCCCCTTTTTTTTTTTTCTTCCTTCTATTTTTCCC
TTACCCATCCACTCCGCCTTTACACTCAATTTATCTCTCCCGCTCATCTT
ACCCCCTCTTTCCCCTTTTCCCCCTTATTCCCTATTCCTTTTACCCTCCC
TTACCTCCCCTCCTTCCTTCATTTTTTTCCTTCTCCTCCGTTTCTTTTTT
CCTCCTTCTTTCCATCCCTTATCCCTTACCGCTACCCCTTTTTTCCCCCT
TCCCTCCTTTTTCCCTCGTTTTACCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_d14.g1 MSMg01no103_d14.g1 CHROMAT_FILE:
MSMg01no103_d14.g1 PHD_FILE: MSMg01no103_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:04 2005
         (205 letters)



>mm_chr3_53892542_53893146
          Length = 605

 Score =  350 bits (181), Expect = e-101
 Identities = 199/205 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaatcaccacaaaacccatagcaaaacgtctaatatcttctatgttgagatctggg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 405 tcagaaatcaccacaaaacccatagcaaaatgtctaatatcttctatgttgagatctggg 346

                                                                       
Query: 61  cacaggaggaagcagcaagagcctgagggaacagcgaggctctgaagtacatcctcttca 120
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 345 cacaggaggaagcagcaagagcctgagggaacagctaggctctgaagtacatcctcttta 286

                                                                       
Query: 121 tagaccctgttacctgttctggaacagcactggccagcgacaggatcattggctagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 285 tagaccctgttacctgttctggaacagcactggccagcgacaggatcattggctagaact 226

                                    
Query: 181 ggattgcacaggatctgtcccaggt 205
           | | |||||||||||||||||||||
Sbjct: 225 gaactgcacaggatctgtcccaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)