BAC Information

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BAC

Clone NameMSMg01-103E04
Chromosome3 (Build37)
Map Location 25,331,261 - 25,331,834
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103E04.T7 (MSMg01no103_e04.b1)MSMg01-103E04.TJ (MSMg01no103_e04.g1)
ACCAG318175AG318176
length677678
length of high quality
(start - end)
238 (79 - 316)575 (86 - 660)
definitionCHROMAT_FILE: MSMg01no103_e04.b1 PHD_FILE: MSMg01no103_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:07 2005CHROMAT_FILE: MSMg01no103_e04.g1 PHD_FILE: MSMg01no103_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTCTCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXATTCAACGAGG
ATCCGCGGAATTCATTGTTCCCAAAACTGCATAGTATTCCATTGTGTAAA
TGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGTCCT
TTCCAGCTTCTGACTATTACAAATATGGCTGCTATGAACATAGTGGAGCA
TGTGTCCTTATTACATGTTGGAGCATCTTCTGGGTATATGCCCAGGAGTG
TTATTGCTAGATCTTCCAATAGTACTATATTCAGTTTTTTGAGAAACTGC
CAAAATGATTTCCCGAGTGGTTGTATTATTTTGCAATCCCACCAGCAATG
GAGGAGCTTTCCTCTTTCTCCATATCCTCACAAGCATCTGCGGTCACCTG
AGCTTGTGGTCTTAGACATTCTGACTGGAGTGCGGTGGAATCTCAGGGTT
GCTTTGATTTTCATTTCCCTGATGAATAAGAACGTTGAATATTTTTTTTA
GGTGTCTCTCAGTCATTCAGTATTCCTCAGCTGAGAATTCTTTGTTTAGC
TTTGTACCCCATTTCGCAATAGGATTATTTGTTTCTCCGGACCCCAACCT
CTTGAGTTCTTCGCACACCAAATATCACCCCTATATCACACTTATGACTG
CCAATAGATCTTTTTCCCAATATGCCG
TAACCCNNNNACCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGAAATTGCACA
TATGTGAAAGACAAACCCTCCAGCTGTTGACTCTCCTAGGTTCTGCACCT
ACATTGTTCCTCTACTGAGATCTCATGAGTAAATTCAAGTGACCCTCAGC
GAGAAAGATGCAATGTGAAGAGGGACTATGCTTTCTATTGAATTCTTAGT
AGTAAACATTTTGTCATGCAACATGAGTAAATCAATCGACTGAGAACTGT
AATCAGAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAAC
GAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATTATAGCTCTGC
AGCTAAGACATGTTCAATTAGAGTTGTATTTCTATAAATTACATATAAGG
GAATGAAAAGAATATTAAACTTATAGAATTTTTTTTCTGGGATTCATATC
AGTGAGTATTCACGACTATACCTCTAGTTTCTCCCAAGACTTTAATAACT
ATTCCCTCTATTATCAAAACTACTGCAAATTATTTTATAGTAATTACTTT
TGCCCCTTATAATATCTTCTTTAGTTTCTGCCAATTGATGGAGGAAGCTT
TCTATTAAAACCTCCCATGGGATGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_e04.g1 MSMg01no103_e04.g1 CHROMAT_FILE:
MSMg01no103_e04.g1 PHD_FILE: MSMg01no103_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:07 2005
         (575 letters)



>mm_chr3_25331061_25332034
          Length = 974

 Score = 1073 bits (555), Expect = 0.0
 Identities = 570/575 (99%), Gaps = 1/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgaaattgcacatatgtgaaagacaaaccctccagctgttgactctcctaggttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgaaattgcacatatgtgaaagacaaaccctccagctgttgactctcctaggttctg 260

                                                                       
Query: 61  cacctacattgttcctctactgagatctcatgagtaaattcaagtgaccctcagcgagaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cacctacattgttcctctactgagatctcatgagtaaattcaagagaccctcagcgagaa 320

                                                                       
Query: 121 agatgcaatgtgaagagggactatgctttctattgaattcttagtagtaaacattttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgcaatgtgaagagggactatgctttctattgaattcttagtagtaaacattttgtc 380

                                                                       
Query: 181 atgcaacatgagtaaatcaatcgactgagaactgtaatcagaatggtactgttggggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcaacatgagtaaatcaatcgactgagaactgtaatcagaatggtactgttggggcat 440

                                                                       
Query: 241 ccttacaccttgcaagactgttaacgaaaggagcaaacttcagagtaacaaacccacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttacaccttgcaagactgttaacgaaaggagcaaacttcagagtaacaaacccacagc 500

                                                                       
Query: 301 aaattatagctctgcagctaagacatgttcaattagagttgtatttctataaattacata 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattatagctctgcagctaacacatgttcaattagagttgtatttctataaattacata 560

                                                                       
Query: 361 taagggaatgaaaagaatattaaacttatagaattttttttctgggattcatatcagtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagggaatgaaaagaatattaaacttatagaattttttttctgggattcatatcagtga 620

                                                                       
Query: 421 gtattcacgactatacctctagtttctcccaagactttaataactattccctctattatc 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtattcaccactatacctctagtttctcccaagactttaataactattccctctattatc 680

                                                                       
Query: 481 aaaactactgcaaattattttatagtaattacttttgccccttataatatcttctttagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaactactgcaaattattttatagtaattacttttgccccttataatatcttctttagt 740

                                              
Query: 541 ttctgccaattgatggaggaagctttctattaaaa 575
           ||||||||||||||||||||||||  |||||||||
Sbjct: 741 ttctgccaattgatggaggaagctc-ctattaaaa 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space:   544660
Effective search space used:   544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)