BAC Information

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BAC

Clone NameMSMg01-103E22
Chromosome3 (Build37)
Map Location 102,332,384 - 102,332,624
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb
Downstream geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103E22.T7 (MSMg01no103_e22.b1)MSMg01-103E22.TJ (MSMg01no103_e22.g1)
ACCAG318211AG318212
length721730
length of high quality
(start - end)
241 (69 - 309)603 (76 - 678)
definitionCHROMAT_FILE: MSMg01no103_e22.b1 PHD_FILE: MSMg01no103_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:11 2005CHROMAT_FILE: MSMg01no103_e22.g1 PHD_FILE: MSMg01no103_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGATCACTATTTCCGACCGTGCGCGGNAATCTTT
GCAATTTCTAAAACACAGCAAATCTCTTCCTAGGGCAGTCATAAGCCTCA
TTTTTATTGTGTCCACGATCTTTTTACCCAAAATAGTGATATTTTTTATG
TAATGGATCAAAGAAAGATTGTGATTATAGCAGGGACTATTATGAAACCA
GAAAGGAGCCAACTAGAGAGAGAAGGAATACCGAGGGTTATTTTTATTTG
GCATTCTTCAAATATGACTGACTGTAAATAAACTGTATGTTGTCCTTTGA
GGGCAAGAGTCTGACTCGTTTACACCACATATGGCCATCAGGAGGTCTGG
TTTTTTTCTTCTCCCCCCCCCCCGTGACTCTAGATATGGTTTGGCTATGG
AATTCTTCAGCTTGAGGCTGCAGAGGACAGGCTTTTTCAGAGCCTTGGAA
ACTACTTGTTTTAGACATAGAATTGTGGCATTTTTCATTTCTACAGCCAT
CAGTGATGTCTGTAGCAGGAATTTTGTAAACTGCTGTGCGTTGAGTACGA
ATAATCCCTCCGGGAAGCTGTAGGATGGTCCAAAAGTCATCTTCCTCGGG
CGACTTTTCATCCCCCGGTTCCCAAACCAGGATCTGCATAGACAAATCTG
TTTTTTTTTTTGTATAGATGGCCAGTCTGCCCTTTGCCCCACTGCAGATG
ATCCCCATTGCGACCCATCCC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAA
AGCAATCTACAGCAAACCAGGAGCCAACATCAAAGTAAATGGAGAGAAGC
TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCT
CCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACA
ACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATAT
CACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCC
ACCAGAGAACTCCTAAACCTGATAACCAGCTTCGGTGAAGTAGCTGGATA
TAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAAC
AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCCCAATAGTCACAAAT
AATATAAAATATCTCGGAGTGACTCTAACTAAGGAAGTGAAAGATCTGTG
TGATAAAAACTTCAAGTCTCTGAAAAAAGAAATTAAAGAAGATCTCAGAA
GATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAA
ATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAA
AATTCCAACTCAATTCTTCAACGAATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_e22.b1 MSMg01no103_e22.b1 CHROMAT_FILE:
MSMg01no103_e22.b1 PHD_FILE: MSMg01no103_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:11 2005
         (241 letters)



>mm_chr3_102332184_102332824
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatctcttcctagggcagtcataagcctcatttttattgtgtccacgatctttttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 caaatctcttcctagggcagtcataagcctcatttttattgtgtccatgatctttttacc 382

                                                                       
Query: 61  caaaatagtgatattttttatgtaatggatcaaagaaagattgtgattatagcagggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaatagtgatattttttatgtaatggatcaaagaaagattgtgattatagcagggact 322

                                                                       
Query: 121 attatgaaaccagaaaggagccaactagagagagaaggaataccgagggttatttttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 attatgaaaccagaaaggagccaactagagagagaaggaataccgagggttatttttaaa 262

                                                                       
Query: 181 tggcattcttcaaatatgactgactgtaaataaactgtatgttgtcctttgagggcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcattcttcaaatatgactgactgtaaataaactgtatgttgtcctttgagggcaaga 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)