BAC Information

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BAC

Clone NameMSMg01-103G09
Chromosome3 (Build37)
Map Location 115,283,045 - 115,283,291
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfm3, EG546808
Downstream geneEdg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103G09.T7 (MSMg01no103_g09.b1)MSMg01-103G09.TJ (MSMg01no103_g09.g1)
ACCAG318275AG318276
length732729
length of high quality
(start - end)
247 (69 - 315)138 (73 - 210)
definitionCHROMAT_FILE: MSMg01no103_g09.b1 PHD_FILE: MSMg01no103_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:19 2005CHROMAT_FILE: MSMg01no103_g09.g1 PHD_FILE: MSMg01no103_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCTCCATTGTTACAATTTTAGACCCAAATCAGTAACAGGTTGGAAGGCAT
TAGCTGGGCATAACAAAGCATTACTTGTATATGTGGGTGGGTCTGGCAGC
TCAGCTGGTCCTAGGATGTAAATGAGCTGCAAGCAAGCCAATCCCCAGAA
TGCAGAGTCTTTAGTTGCTGCTGCTCCATCCTCATGAATCTAGGCTCCCA
GAACTTGAATATAAAATGCCAATTCTAAGAAAGCTGTCTGACCCCAGCTT
ATGAAGCAACGCACGGATCTGTGTGTGTTCAATACTTTGTCGAGCCACCT
TTTCTAAGTTGATTTTCACACCACATTTACTTGTGATTCTTCTCACCTCC
ACTGGGAATTTTACGTTAGGAAGAGCAATATATTTTCTTCTGGTGTCTCA
CTGGCATAAATAAGGAGAAGATAGGAGAGGCTGTTTTCTCCTTGACCTCA
GGGCCTCTATAATGCATCCTGAATCATATTGCCCCTTCCTTCCAGGGCTC
ATTTTTGGACCTGCGATACCACACAATTGTCATCTATTCCTATTTTTCGC
CTTTACATTTCTAAGACACTCTCTGACTCAGAGTCATGCTTCTTTTGTTG
TGGCCCTCTCCCTGCAATTTTATTCCTGGAACATTTCGCCTACACTCCCT
GTTCTCCCACCCAACAACTGGTTCTTTCATTT
CATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCACGTGACAGCAGATGCTGGCGAGGATGTGGATAATGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTCATACAACCACTCTGGATACCA
GTCTGGCGGTTCCTCTTATTACTGGACATAGCACTACCAGAGGACCCAGC
ATTACCTCTCCTGCTTACATATCCAGAAGATGCCTTACCTGGCATGAATG
ACATCTGCTTCACCCCCGCTTTAGTAGCTTCCATTCATACCATTCCGACG
CTGCGTTTGACCTAGATGCCCCTCAACAGACCAATGTATACTGAAAATGT
GGTACATCTACACAATGGATTATTACTCTGCTATTATAAAGTATGTATTA
ACCGACATTCCTTACTTTCATTGGCACGGTTCCTGCAGTACTCCATTTCC
GCACGATGTACCATTTTCCCCTCCCACCCCCCCTTACCACGTTTTCTCTG
CTTACATGGTCATCACCCCTTATCCTCCCCACCCCCTCCCACTTTTCACC
TCCTCCTGTCAATTCCCCCCACTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_g09.b1 MSMg01no103_g09.b1 CHROMAT_FILE:
MSMg01no103_g09.b1 PHD_FILE: MSMg01no103_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:19 2005
         (247 letters)



>mm_chr3_115282845_115283491
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagacccaaatcagtaacaggttggaaggcattagctgggcataacaaagcattacttgt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 tagacccaaatcagtaacaggttgggaggcattagctgggcataacaaagcattacttgt 388

                                                                       
Query: 61  atatgtgggtgggtctggcagctcagctggtcctaggatgtaaatgagctgcaagcaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atatgtgggtgggtctggcagctcagctggtcctaggatgtaaatgagctgcaagcaagc 328

                                                                       
Query: 121 caatccccagaatgcagagtctttagttgctgctgctccatcctcatgaatctaggctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caatccccagaatgcagagtctttagttgctgctgctccatcctcatgaatctaggctcc 268

                                                                       
Query: 181 cagaacttgaatataaaatgccaattctaagaaagctgtctgaccccagcttatgaagca 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagaacttgaatacaaaatgccaattctaagaaagctgtctgaccccagcttatgaagca 208

                  
Query: 241 acgcacg 247
           || ||||
Sbjct: 207 acacacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)