Query= MSMg01no103_h16.b1 MSMg01no103_h16.b1 CHROMAT_FILE:
MSMg01no103_h16.b1 PHD_FILE: MSMg01no103_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:25 2005
(531 letters)
>mm_chr3_49387238_49388167
Length = 930
Score = 988 bits (511), Expect = 0.0
Identities = 523/527 (99%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgagtttgtcgccagcctggtctacagagtgagttccaggacagccagggcta 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattcctgagtttgtggccagcctggtctacagagtgagttccaggacagccagggcta 639
Query: 65 cacagagaaaccctgtctcgaaaaaaaccaaaccaaaccaaaccaaaccaaaccaaacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cacagagaaaccctgtctcgaaaaaaaccaaaccaaaccaaaccaaaccaaaccaaacca 579
Query: 125 aaccaaaccacaacaaaaaaaaaagtcttacaggttgcaaagccattctgtattttaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaccaaaccacaacaaaaaaaaaagtcttacaggttgcaaagccattctgtattttaagt 519
Query: 185 aattatgtagtgacgttagtaagaaaataggagcatgtagcattcatgttgtagacaggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aattatgtagtgacgttagtaagaaaataggagcatgtagcattcatgttgtagacaggt 459
Query: 245 gttactctcagtttcctatatcagttccttagtgttatctatacatggaaactaacaatt 304
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 458 gttactctcagtttcctatatcagttccttagtg-gacctatacatggaaactaacaatt 400
Query: 305 caaaactgaaaattgatggcttagatggaacatgtatatgagcaaataaatgtaatattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caaaactgaaaattgatggcttagatggaacatgtatatgagcaaataaatgtaatattt 340
Query: 365 attgaaaatatattttttcaaacaatatattctgatcatggtttattcccctcatctccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attgaaaatatattttttcaaacaatatattctgatcatggtttattcccctcatctccc 280
Query: 425 ataccctccccaactttctagacttctaatttcacaccttcattcttgcctcttaaaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ataccctccccaactttctagacttctaatttcacaccttcattcttgcctcttaaaaaa 220
Query: 485 ataaacaggcaaataaaaatcgaatcataatttttataaaggacaag 531
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ataaacaggcaaataaaaatcgaatcataatttttataaaggacaag 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_h16.g1 MSMg01no103_h16.g1 CHROMAT_FILE:
MSMg01no103_h16.g1 PHD_FILE: MSMg01no103_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:25 2005
(538 letters)
>mm_chr3_49297840_49298778
Length = 939
Score = 1007 bits (521), Expect = 0.0
Identities = 533/537 (99%), Gaps = 1/537 (0%)
Strand = Plus / Plus
Query: 1 ttaaggtaaaaaa-tatccttcagaagccctaacagcggaactgccatccctcgaacaat 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggtaaaaaaatatccttcagaagccctaacagcggaactgccatccctcgaacaat 260
Query: 60 agaggtgaagccgaatggagaggtgtgaaagtctagaaagcccaggacacagaaatgcat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtgaagccgaatggagaggtgtgaaagtctagaaagcccaggacacagaaatgcat 320
Query: 120 gggaagaatgagagacccaggcagatcctttgaattcagtagatgcccccacatccaaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaagaatgagagacccaggcagatcctttgaattcagtagatgcccccacatccaaac 380
Query: 180 agcatggagtagagtagaaacaggaagagacattgggatggatctttggatgaatctaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcatggagtagagtagaaacaggaagagacattgggatggatctttggatgaatctaca 440
Query: 240 actttcatgagaaagagagggccaatggtgtccttgctggacaagcaggtgttgctctac 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttcaagagaaagagagggccaatggtgtccttgctggacaagcaggtgttgctctac 500
Query: 300 cttatcccacgctgggggatgcttctcaacatttgttgtcgttatggttctctctctctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttatcccacgctgggggatgcttctcaacatttgttgtcgttatggttctctctctctg 560
Query: 360 tctctctctgtctctgtctctgtctctgtctctgtctctgtctctctctctctgtctctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctctctgtctctgtctctgtctctgtctctgtctctgtctctctctctctgtctctc 620
Query: 420 tctgtctctctgtcttttcagttcttggaactaaaattatatatatatatatatattgga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtctctctgtcttttcagttcttggaactaaaattatatatatatatatatattgga 680
Query: 480 tattttctttacttacattccatatgttttcccctttccaagtctccccttcagaag 536
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattttctttatttacatttcatatgttttcccctttccaagtctccccttcagaag 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
