Query= MSMg01no103_n04.b1 MSMg01no103_n04.b1 CHROMAT_FILE:
MSMg01no103_n04.b1 PHD_FILE: MSMg01no103_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:51 2005
(309 letters)
>mm_chr3_80780808_80781517
Length = 710
Score = 534 bits (276), Expect = e-156
Identities = 291/296 (98%), Gaps = 1/296 (0%)
Strand = Plus / Minus
Query: 15 cgttcgttgtcatttgctagatatgtgaagctagtacagaatgagcaagtccagaaaaga 74
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cgttcattgtcatttgctagatatgtgaagctagtacagaatgagcaagtccagaaaaga 451
Query: 75 gccattgttcccaagaaatatggagtcttggaaaatgtgtaggatcataaaggaaggatt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gccattgttcccaagaaatatggagtcttggaaaatgtgtaggatcataaaggaaggatt 391
Query: 135 tctgtatctactttatcagaaatttgatgagtgagaagtttcttgggccataagtgttga 194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttgtatctactttatcagaaatttgatgagtgagaagtttcttgggccataagtgttga 331
Query: 195 taacagtgatataactttagagctaaaccaaatcaacacagtgtaagcatgcatctcctt 254
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 330 taacagtgatataactttagagctaaaccaaatcaacacagtctaagcatgcatctcctt 271
Query: 255 agagtactgtgaatcttagtattttaattttttt-ctttcagttggataaaaagac 309
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 270 agagtactgtgaatctcagtattttaattttttttctttcagttggataaaaagac 215
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 710
Length adjustment: 9
Effective length of query: 300
Effective length of database: 701
Effective search space: 210300
Effective search space used: 210300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_n04.g1 MSMg01no103_n04.g1 CHROMAT_FILE:
MSMg01no103_n04.g1 PHD_FILE: MSMg01no103_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:52 2005
(184 letters)
>mm_chr3_80589979_80590562
Length = 584
Score = 340 bits (176), Expect = 2e-98
Identities = 182/184 (98%)
Strand = Plus / Plus
Query: 1 tctctaagtaataatcagaaatctttaactaaatattctatggcttttgccccagtaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctaagtaataatcagaaatctttaactaaatattctatggcttttgccccagtaaca 260
Query: 61 ataatatgcttatcagagttaagaaaatttagaactttaatttgcaacagaattttataa 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatatgcttatcagagttaggaaaatttagaactttaatttgcaacagaattttataa 320
Query: 121 tagattaaatggtgttccaaaattactgaaaatgaagataggtatttaattccttggtca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tagattaaatggtgttccaaaattactgaaaatgaagataggtatttaattccttgatca 380
Query: 181 aaat 184
||||
Sbjct: 381 aaat 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space: 101376
Effective search space used: 101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
