NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGACATATGCACACATACACACACATACCACCTCCCCATGCAC
ACAGCTTGTGTACACAGCTTGTACACACACACACACACACACACATACAC
ACATATGCATACACATATACCACCATACACATACACACAGCTTGTACTAC
TCCTTTATGGATATGGTGACAGATTGGTGATTTAAAGGTGAGGACTAAAT
AAGCTGATGTTTTCTGTTCTTGTTCTTTTAATTTACTTAACAGCTATCAA
GGGCTTGTAAAAAAGCCCAGAACGAATTATTCTGTATCAAAATAAGACAA
TTAAAATAATCAACACACAGTTTGACTGTCTGAATGACTAAACACATACA
TCTGCAATCTCATCCTTACAAAACACTCTGATGTGCAGGGATATGTAGCT
TCAAAACAGGAAAAAAAAAGGAAGAAGCAAATTATTCCTATGGCTGGTGA
TACTGCACAGCAGAAGGGAGAGGAAATTGCACCACCTATTCTGGGAAATA
ATTTTGGCCTCTTTATGACTCTCATTCAACAAATGAGTACTGGAAGTACA
GTATGCAAATGGTTTGTACTAAGGCTGTAGGGCACTAACACGGTTTAGTC
TTAGGCTTTTCTTTGAAGGGATTAAAAGCAGAAGCTTCACTCATGCTGAT
TATGT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAACTAAAACCATCTGTTTCTGTTTT
GTTTGTTTGTTTTTTGTTTGTTTTTCTTTTAATGACTGCTTCTATTTTCA
TAGGGACTATAGGTCTATTTAGAGTTATCTTGATTTAACTTTGGCAATGG
TATCTATTGAGAAAAAGTTTCCATTTCATTTAGCTTTCCAGTTTTGGGGA
GTACATGTTTTTGAAATATGACCTAATAATTTTTTAATTTTCTTTGTGTC
TGTCATTATGTTCCCCTTTTTATTTCTTAGTTCAAAAATTTAGATATTAC
CCAAATTTCTCTGCCTTTTAGTTAGTTCAGATAAGGGTTTGTCTGTCTTT
TTGATTTTAAAAGAAGCAACTTTTTATATTCTCAGTTCTTTGTATTGTGC
TCTCTGTTTCTATTTTAGTGATTTCAGCCTTCATCATGATTATTTCCTCC
CTTCTACTCCTCTTGGGGTGTGGTTGCTCCTTTTTTTTTAAAAAGCTAGA
ACTTTCAGCTATTTTATTAAGTTGCTAGAATGTGATCTCTTTAACTTCTT
TATGAAGTTCATTAGTGCAATAAAGTTCCCTTTTAGGATCACTTTCCTTG
TGCCCCATTACCTTGAGCGCGTCATGCATTCATTTTTCCTGAATTTAAGG
GACGTTTTTAACTTA

Query= MSMg01no104_d09.b1 MSMg01no104_d09.b1 CHROMAT_FILE:
MSMg01no104_d09.b1 PHD_FILE: MSMg01no104_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:23 2005
         (660 letters)



>mm_chr3_75079891_75080950
          Length = 1060

 Score = 1168 bits (604), Expect = 0.0
 Identities = 646/666 (96%), Gaps = 10/666 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagacatatgcacacatacacacacataccacctccccatgcacacagcttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcacagacatatgcacacatacacacacataccacctccccatgcacacagcttgt 254

                                                                       
Query: 65  gtacacagcttgtacacacacacacacacacacaca----------tacacacatatgca 114
           |||||||||||| |||||||||||||||||||||||          ||||||||||||||
Sbjct: 255 gtacacagcttgcacacacacacacacacacacacacacacacacatacacacatatgca 314

                                                                       
Query: 115 tacacatataccaccatacacatacacacagcttgtactactcctttatggatatggtga 174
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cacacacataccaccatacacatacacacagcttgtactactcctttatggatatggtga 374

                                                                       
Query: 175 cagattggtgatttaaaggtgaggactaaataagctgatgttttctgttcttgttctttt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagattggtgatttaaaggtgaggactaaataagctgatgttttctgttcttgttctttt 434

                                                                       
Query: 235 aatttacttaacagctatcaagggcttgtaaaaaagcccagaacgaattattctgtatca 294
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 aatttacttaacagctatcaagggcttgtaaaaaagcccagaacaaattattctgtatca 494

                                                                       
Query: 295 aaataagacaattaaaataatcaacacacagtttgactgtctgaatgactaaacacatac 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaataagacaattaaaataatcaacacacagtttgactgtctgaatgactaaacacatac 554

                                                                       
Query: 355 atctgcaatctcatccttacaaaacactctgatgtgcagggatatgtagcttcaaaacag 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atctgcaatctcatccttacaaaacactctgatgtgcagggatatgtagcttcaaaacag 614

                                                                       
Query: 415 gaaaaaaaaaggaagaagcaaattattcctatggctggtgatactgcacagcagaaggga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaaaaaaaaaggaagaagcaaattattcctatggctggtgatactgcacagcagaaggga 674

                                                                       
Query: 475 gaggaaattgcaccacctattctgggaaataattttggcctctttatgactctcattcaa 534
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaggaaattgcaccacatattctgggaaataattttggcctctttatgactctcattcaa 734

                                                                       
Query: 535 caaatgagtactggaagtacagtatgcaaatggtttgtactaaggctgtagggcactaac 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 735 caaatgagtactggaagtacagtatgcaaatggtttgtactaaggctgtaggacactaac 794

                                                                       
Query: 595 acggtttagtcttaggcttttctttgaagggattaaaagcagaagcttcactcatgctga 654
           | || | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 atggctaagtcttaggcttctctttgaagggattaaaagcagaagcttcactcatgctga 854

                 
Query: 655 ttatgt 660
           ||||||
Sbjct: 855 ttatgt 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)