BAC Information

Click to search

BAC

Clone NameMSMg01-104F15
Chromosome3 (Build37)
Map Location 142,196,324 - 142,196,867
singlet/doubletsinglet
Overlap geneGbp6
Upstream geneUnc5c, Bmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5
Downstream geneGbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104F15.T7 (MSMg01no104_f15.b1)MSMg01-104F15.TJ (MSMg01no104_f15.g1)
ACCAG318986AG318987
length712693
length of high quality
(start - end)
544 (45 - 588)533 (76 - 608)
definitionCHROMAT_FILE: MSMg01no104_f15.b1 PHD_FILE: MSMg01no104_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:35 2005CHROMAT_FILE: MSMg01no104_f15.g1 PHD_FILE: MSMg01no104_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCTCTTTTTAGCTCTGCACCTCATTTTTAAATTGCGCTGTTTGGGTTG
TTTATGTCTAAGGTCTTGAGTTCTGTGTAAATTTTAGATATTATCTCTCT
GTCAGACATAGGGTTGGGGAAAACCCTTTCCTAATCTGAAGGCTGCTGTT
TTGTCCAATGACAGTGTCCTTTGCTTTACAGAACCTTTGCAGTTTCATGA
GTTCCCATTTGCCAAGTGTTGATCTTAGAGTCTGAGCCCTTTGGAAGAAC
CAGTAGTTTAAAACAAGCTCTACCCCATAAACAAACAAACAAATAAGTAA
ATACAAATTAAAATAAAAGATGAAATGCCATCCTGAGCTTGTTGGATCCT
ACCTAGAAAAGCAAAACAAAAAACAAAACACCCCTAAAATGTAAAATGTA
ACCCCTGAAAAAGCACAATGGGAAAGCCAAGTGAGATGATGCCTTCATTT
AATCCCAGTAGATCAAGAGACTATGATAGGATTGGGTGTACGAGGGCAGC
CTATCTACACAGAAAGCTTCATGCTAGCCTGAGCTGCACGAGACCTTGTT
GAAGTGGAATAAAGTGAAAATGACCAATAATTAGATTTGCTTAAAAAAGC
TCTGCTCTTGGCTTTGCTGGTTGTCAATCATGGCTTCACTCTGCTCCCTG
GTACAAAACACC
NCCCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCCAAAGGTTTGGTTTCTTTCAG
TTCACAGTGGTATTTATGCCACAAATATCACATGGACTATATGCATTGCT
TTAAGGTGAACCAGTATCTTCTGGAACATGATATAGTTTTTGAACTCATG
AAGTCACAGCAGCTGTGGCTGCCTATAGAAAACCTGCATAAAGGCGGGTG
GTTAGTGGCACATGCCTTCAATCCAGCACTTGGGAAGCAAAGGCACATGG
ATCTCTGAGTTTGAAGACAGCCTGGTTTACACAGTGAGTTTCAGGACAGC
CAGAGCTACACAGACACACTATTTTGAAAACAAAACAAAAGAAAAAAGAA
AAAATGCATAAATCAAAATTCTACCATAGGTTGGTGAGAGTCCCGGGAAG
CCCAGAGCATAACTGACATGATAATGGCAGTTAATGGCTGCTACAGACTC
CAGGGTTGGTTTTCTTCAGTAAATGGCCCCTGTTAAGTTACCTGAATTCC
ACTAGGTGGCCTTATGCCCACGTTTAAATGAGCTGCACCGACTTGATTAA
ATGAGGACATGAAACTGATTGACGGGTGGCTGGTAGGATATGCAGGAAAG
AGCCCTTATCTTTTCCTCCCCCTTCCCCCCTCTTTTCTTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_f15.b1 MSMg01no104_f15.b1 CHROMAT_FILE:
MSMg01no104_f15.b1 PHD_FILE: MSMg01no104_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:35 2005
         (544 letters)



>mm_chr3_142196121_142197067
          Length = 947

 Score = 1006 bits (520), Expect = 0.0
 Identities = 537/544 (98%), Gaps = 4/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctc-tttttagctctgcacctcatttttaaattgcgctgtttgggttgtttatgt 63
           |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcttttttagctctgtacctcatttttaaattgcgctgtttgggttgtttatgt 263

                                                                       
Query: 64  ctaaggtcttgagttctgtgtaaattttagatattatctctctgtcagacatagggttgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaaggtcttgagttctgtgtaaattttagatattatctctctgtcagacatagggttgg 323

                                                                       
Query: 124 ggaaaaccctttcctaatctgaaggctgctgttttgtccaatgacagtgtcctttgcttt 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaaaaccctttcctaatctgcaggctgctgttttgtccaatgacagtgtcctttgcttt 383

                                                                       
Query: 184 acagaacctttgcagtttcatgagttcccatttgccaagtgttgatcttagagtctgagc 243
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 acagaacctttgcagtttcatgagttcccatttgccaagtgttggtcttagagtctgagc 443

                                                                       
Query: 244 cctttggaagaaccagtagtttaaaacaagctctaccccataaacaaacaaacaaataag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctttggaagaaccagtagtttaaaacaagctctaccccataaacaaacaaacaaataag 503

                                                                       
Query: 304 taaatacaaattaaaataaaagatgaaatgccatcctgagcttgttggatcctacctaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taaatacaaattaaaataaaagatgaaatgccatcctgagcttgttggatcctacctaga 563

                                                                       
Query: 364 aaagcaaaacaaaa---aacaaaacacccctaaaatgtaaaatgtaacccctgaaaaagc 420
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagcaaaacaaaacaaaacaaaacacccctaaaatgtaaaatgtaacccctgaaaaagc 623

                                                                       
Query: 421 acaatgggaaagccaagtgagatgatgccttcatttaatcccagtagatcaagagactat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acaatgggaaagccaagtgagatgatgccttcatttaatcccagtagatcaagagactat 683

                                                                       
Query: 481 gataggattgggtgtacgagggcagcctatctacacagaaagcttcatgctagcctgagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gataggattgggtgtacgagggcagcctatctacacagaaagcttcatgctagcctgagc 743

               
Query: 541 tgca 544
           ||||
Sbjct: 744 tgca 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 947
Length adjustment: 10
Effective length of query: 534
Effective length of database: 937
Effective search space:   500358
Effective search space used:   500358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)