BAC Information

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BAC

Clone NameMSMg01-104G08
Chromosome3 (Build37)
Map Location 33,373,098 - 33,373,476
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G08.T7 (MSMg01no104_g08.b1)MSMg01-104G08.TJ (MSMg01no104_g08.g1)
ACCAG319019AG319020
length704704
length of high quality
(start - end)
604 (41 - 644)497 (72 - 568)
definitionCHROMAT_FILE: MSMg01no104_g08.b1 PHD_FILE: MSMg01no104_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:39 2005CHROMAT_FILE: MSMg01no104_g08.g1 PHD_FILE: MSMg01no104_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAATTTGCGGCGCTATACGACTCCTATTCCAAGAGGACCGCGGAATTC
TCAACAGTGCATTGTAACTCAGGAGCTAGATGTTGTTCTGCCTGCTTAAA
GCAGTGAGTCAATGAGAAGGGACTGTCTGAGATAAAACTGGAAAAGGCAT
TATTATGGCCTACTGGAGGATATCACATTACGTGGGAGATTGTTGCAACT
TTAAGATAATGAAGGCTGGTGTTCTGGCTAATTTGTATGTAGACGTAACA
CAAGCTAGAACCAACTGAAAAGAGGGAACTTCGATTGAGAAAATGCCTTT
GTAAGATTGGGCTGTAGGCAGCTGAGCCTGTAGGGCATTTTCTTAATTAG
TGATTGATGGGGCAGGCTTTACCTATTTTGTGGGGCCAACCCTGAACTTG
GTTGGTCTTGGGTTCTATAAGAAAGCAGGCTGATAGTCCAATTATCACTG
AAGAGGCTTCCTTCTGCAGTTGATGGGAGCAGATGTGAAGACCCACACTC
AAACATTAGGTGGAGCTTAGGGAACCCCATAAAAAAGGGAAGGAAAGATT
GGAAGAGCCAGAGGGGTCAAGGGCACCATGAGAACAAGGTTCACTAAATC
AACTAAGAAAGGGATCATAGACCCTACCAAAGAGACTGAAGCAGCAACCA
TGGAACCTGTATGGGTCTGCACCAGCCTATGCATATGTTATAGTTGCTTC
TGCA
ACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGA
GATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCT
GGATTGGGCGAAGTGGGCATTCTGGGTTCTGATGATGGTGAGTGGTCCTG
GCTTCTGTTAGTAGGATTCTTACATTTACCTTTCGCCATCTGGCAATCTC
TGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGA
TTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAG
TTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAA
GGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGC
CCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGG
CCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCT
TGTCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGTTGGCGCCGCCTCATA
AGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGAT
GGCGCCGTCCCAGAATCTCTGCGACTCTCTCCGCCGTTCCAGAAACGGTT
GGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g08.b1 MSMg01no104_g08.b1 CHROMAT_FILE:
MSMg01no104_g08.b1 PHD_FILE: MSMg01no104_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:39 2005
         (604 letters)



>mm_chr3_33373098_33374101
          Length = 1004

 Score =  717 bits (371), Expect = 0.0
 Identities = 377/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaacagtgcattgtaactcaggagctagatgttgttctgcctgcttaaagca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggaattctcaacagtgcattgtaactcaggagctagatgttgttctgcctgcttaaagca 320

                                                                       
Query: 64  gtgagtcaatgagaagggactgtctgagataaaactggaaaaggcattattatggcctac 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgagccaatgagaagggactgtctgagataaaactggaaaaggcattattatggcctac 260

                                                                       
Query: 124 tggaggatatcacattacgtgggagattgttgcaactttaagataatgaaggctggtgtt 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tggaggatagcacattacgtgggagattgttgcaactttaagataatgaaggctggtgtt 200

                                                                       
Query: 184 ctggctaatttgtatgtagacgtaacacaagctagaaccaactgaaaagagggaacttcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctggctaatttgtatgtagacgtaacacaagctagaaccaactgaaaagagggaacttcg 140

                                                                       
Query: 244 attgagaaaatgcctttgtaagattgggctgtaggcagctgagcctgtagggcattttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 attgagaaaatgcctttgtaagattgggctgtaggcagctgagcctgtagggcattttct 80

                                                                       
Query: 304 taattagtgattgatggggcaggctttacctattttgtggggccaaccctgaacttggtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  taattagtgattgatggggcaggctttacctattttgtggggccaaccctgaacttggtt 20

                              
Query: 364 ggtcttgggttctataaga 382
           |||||||||||||||||||
Sbjct: 19  ggtcttgggttctataaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)