Query= MSMg01no104_i08.b1 MSMg01no104_i08.b1 CHROMAT_FILE:
MSMg01no104_i08.b1 PHD_FILE: MSMg01no104_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:49 2005
(508 letters)
>mm_chr3_146744439_146745346
Length = 908
Score = 934 bits (483), Expect = 0.0
Identities = 500/507 (98%), Gaps = 6/507 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgagac--tcccttatttaaaaaacattatgcaaattttcacattgctcaagc 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagacaatc--ttatttaaaaaacattatgcaaattttcacattgctcaagc 262
Query: 63 ctcatttactctttaccaagataaaaatttatgttttaatcaagtccatgatctagttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcatttactctttaccaagataaaaatttatgttttaatcaagtccatgatctagttga 322
Query: 123 tgaaggcaaaaatccactgaggtctggctggataataggactgcagcccagagaacacgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaaggcaaaaatccactgaggtctggctggataataggactgcagcccagagaacacgg 382
Query: 183 aatagacaccctcactcccaaacgccgcc-cacgctatccctgtttgctctcccctctcg 241
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 383 aatagacaccctcactcccaaacgccgccgc-cgctatccctgtttgctctcccctctcg 441
Query: 242 cacaagcacactgtagaatcctgggctttctgtttcataaccgtaggccccgttggctgc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacaagcacactgtagaatcctgggctttctgtttcataaccgtaggccccgttggctgc 501
Query: 302 ttaaaaaacatggagtcagcacattttgcccagggctttgattttacaatttaagatggt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaaaaaacatggagtcagcacattttgcccagggctttgattttacaatttaagatggt 561
Query: 362 tcacaggttttgttctttagttagacctatgcaccggcccacactttgcttttatgattc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcacaggttttgttctttagttagacctatgcaccggcccacactttgcttttatgattc 621
Query: 422 aactccaagttattgaaatatacctaagtatggcagccttctccagagatatttctttgg 481
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 aactccaagttattgaaatatacccaagtatggcagccttctccagagatatttctttgg 681
Query: 482 agaccattttcattgctgattatttta 508
|||||||||||||||||||||||||||
Sbjct: 682 agaccattttcattgctgattatttta 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_i08.g1 MSMg01no104_i08.g1 CHROMAT_FILE:
MSMg01no104_i08.g1 PHD_FILE: MSMg01no104_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:49 2005
(494 letters)
>mm_chr3_146854969_146855854
Length = 886
Score = 772 bits (399), Expect = 0.0
Identities = 472/497 (94%), Gaps = 14/497 (2%)
Strand = Plus / Minus
Query: 1 attctgaagcgtatagctgggggcatcttgtccatggcaaacgttggaccaaacacagat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attctgaagcgtacagctgggggcatcttgtccatggcaaacgttggaccaaacacagat 627
Query: 61 ggttcccagtttttatctgcactgggtgacttggtggcaagcatgtggtctctgggaagg 120
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 626 ggttcccagtttttatctgcagtgagtgacttggtggcaagcatgtggtctctgggaagg 567
Query: 121 ttaaaaag--aaaaaaaaagacattggtggaagtcatgcgagtgcttgggagtccaggta 178
|||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||| |
Sbjct: 566 ttaaaaagaaaaaaaaaaagacatt-gtggaagtcatg-gagtgctt-ggagtccagg-a 511
Query: 179 atggcaagaccagctaagatgatcaccantttcctactgtnggacatatcttaattcttt 238
||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 510 atggcaagaccag-taagatgatcacca-tttcctactgt-ggacatatc-taattcttt 455
Query: 239 ctggcagcttactcacgcagaccattcctcttggtagcttgcaagaacgctccccacctc 298
|| || |||||||| ||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 454 -tgacatcttactca-gcagaccattcct-ttggtagcttgcgagaacgctcctcacctc 398
Query: 299 caccccatctgctcttaataccctgccatctctgctcttattgaagttatttgggtttct 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 397 caccccatctgctcttaataccctgccatctctgctcttactgaagttatttgggtttct 338
Query: 359 tagtatcctcgttcccttccaagtctggctggggttacagagttaaatttatgattatga 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 337 tagtatcctcgttcccttccaagtctggctgggattacagagttaaatttatgattatga 278
Query: 419 ataaaaactaaatgag-aaaaaaaatggaacccgttttagtaaccctcgttctacacaca 477
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 277 ataaaaactaaatgagaaaaaaaaatggaacccgttttagtaaccctagttctacccaca 218
Query: 478 gagtgtgatgtaactaa 494
|||||||||||||||||
Sbjct: 217 gagtgtgatgtaactaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 886
Length adjustment: 10
Effective length of query: 484
Effective length of database: 876
Effective search space: 423984
Effective search space used: 423984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
