BAC Information

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BAC

Clone NameMSMg01-104K15
Chromosome3 (Build37)
Map Location 109,897,017 - 109,897,648
singlet/doubletsinglet
Overlap geneNtng1
Upstream gene4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104K15.T7 (MSMg01no104_k15.b1)MSMg01-104K15.TJ (MSMg01no104_k15.g1)
ACCAG319218AG319219
length697729
length of high quality
(start - end)
293 (75 - 367)631 (74 - 704)
definitionCHROMAT_FILE: MSMg01no104_k15.b1 PHD_FILE: MSMg01no104_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:00 2005CHROMAT_FILE: MSMg01no104_k15.g1 PHD_FILE: MSMg01no104_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCTTTAATGTATGCCGCATATACATCCACCTGCCTGAAAAGGG
CATCAGATCCCCTTATAGATGGTTGTCGAGTCACCATGTGGTTGCTGGGA
ATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGTTCTTAAACGCCGAGC
CATCTCTCCAGTGCCAGTTCTCTGAAATCATTTGCAATGTTTAAAAAAAA
AATGTGCTTGCTGTCTCCTAAGAATCAAGGGGCTGGGCGTCACAGGATGC
TGATTCCTAGGATAATCAAGAGAGAATTAATAACTGAATTGATATGTAAA
TAAAAAGCTTTGGTCTGCATGATATGAGCTAACCCAAAGCGATAGCAGTT
CTTCTTTAGAACATTTTCTCTGGCCACACTGATATGTCCGGAGATCCCTG
GAGAGCAAAAAGAACTCTTCTGACCCTGACCTTGGTCACAAATCCCAGGG
ATTACTTAGAGAAGTGGCACATCTCTTTTAGAATGCTTTCTAGCAGCTAT
CCTGAGAAAGTTGTGTGAATATCAAACACAGCTCTTTCACAATATCTCTT
TCTAGTTTTCTGATTTTGATTGCAACACTCCTCACACACTTTTCGAACTT
TCCTAATACGATTTTTGACTTGGCAAGATGATTCTAGATAGATATAA
TGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGGCGCTTTTTCACCTAAGGAAGAA
AACCAGAATGAGATGCAAATCAGTGCTCTTATCTAATGAATAATGCAAAT
GAGTGTTCTGCATATAGCAAGTCAGTCTGTAGAAATTCTTCTGCCTCACC
TCACATTTCTTAGGGGTTTAAGCACTGTGTGTCATAAGAAATTAGAGGAA
GGATTGCCAAGTAATGGCAGAGTCTTGGAGCCCCAAGTTAGTCTAGACAA
TAAAGAATTAGGCTGCACTGGACAGCAAAGAGGAAGCTGATAAAACAAAG
ATATTGCCATTTTTGCTTTGCCTATTTAATGGACTTATATGGCACTTTAA
TCGGTAATTCTTTGCGCGGTTAGTACTTAAAGAGACTCAGTGATACCTGT
TGGCAAGGTTTGAAACTAGTTATGAAAACTCAGCTTTCTCCCAACCCCTA
GTGCATGGAAAAAGAGTGTTACTGAGAGTGTTTTCTTTCTTTTTCAAACA
CCCTAACACTTAAGATTTTTTTTGGTAGCATGACAGAATCCACTTAAAAC
TGCACTTTATGCAACTTTCTAGCTCCATGAAGGGTACTCGATTCTTCAAA
CAATAGTTGCAAACAAACACTTCTTTATGATACACATAATCAATTGATAT
TAACCACGGTGTGCCCAGAGTTACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_k15.g1 MSMg01no104_k15.g1 CHROMAT_FILE:
MSMg01no104_k15.g1 PHD_FILE: MSMg01no104_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:00 2005
         (631 letters)



>mm_chr3_109896817_109897848
          Length = 1032

 Score = 1183 bits (612), Expect = 0.0
 Identities = 627/632 (99%), Gaps = 1/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggcgctttttcacctaaggaagaaaaccagaatgagatgcaaatcagtgctcttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcgctttttcacctaaggaagaaaaccagaatgagatgcaaatcagtgctcttatc 260

                                                                       
Query: 61  taatgaataatgcaaatgagtgttctgcatatagcaagtcagtctgtagaaattcttctg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 taatgaataatgcaaatgagtgttctgcatatagcaagtcagtctgcagaaattcttctg 320

                                                                       
Query: 121 cctcacctcacatttcttaggggtttaagcactgtgtgtcataagaaattagaggaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcacctcacatttcttaggggtttaagcactgtgtgtcataagaaattagaggaagga 380

                                                                       
Query: 181 ttgccaagtaatggcagagtcttggagccccaagttagtctagacaataaagaattaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgccaagtaatggcagagtcttggagccccaagttagtctagacaataaagaattaggc 440

                                                                       
Query: 241 tgcactggacagcaaagaggaagctgataaaacaaagatattgccatttttgctttgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcactggacagcaaagaggaagctgataaaacaaagatattgccatttttgctttgcct 500

                                                                       
Query: 301 atttaatggacttatatggcactttaatcggtaattctttgcgcggttagtacttaaaga 360
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 501 atttaatggacttatatggcactttaatcggtaattctttgtgtggttagtacttaaaga 560

                                                                       
Query: 361 gactcagtgatacctgttggcaaggtttgaaactagttatgaaaactcagctttctccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactcagtgatacctgttggcaaggtttgaaactagttatgaaaactcagctttctccca 620

                                                                       
Query: 421 acccctagtgcatggaaaaagagtgttactgagagtgttttctttctttttcaaacaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acccctagtgcatggaaaaagagtgttactgagagtgttttctttctttttcaaacaccc 680

                                                                       
Query: 481 taacacttaagatttttttt-ggtagcatgacagaatccacttaaaactgcactttatgc 539
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacacttaagatttttttttggtagcatgacagaatccacttaaaactgcactttatgc 740

                                                                       
Query: 540 aactttctagctccatgaagggtactcgattcttcaaacaatagttgcaaacaaacactt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactttctagctccatgaagggtactcgattcttcaaacaatagttgcaaacaaacactt 800

                                           
Query: 600 ctttatgatacacataatcaattgatattaac 631
           |||||||| |||||||||||||||||||||||
Sbjct: 801 ctttatgaaacacataatcaattgatattaac 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space:   634662
Effective search space used:   634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)