Query= MSMg01no104_n03.b1 MSMg01no104_n03.b1 CHROMAT_FILE:
MSMg01no104_n03.b1 PHD_FILE: MSMg01no104_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:13 2005
(604 letters)
>mm_chr3_59864825_59865828
Length = 1004
Score = 584 bits (302), Expect = e-171
Identities = 330/340 (97%), Gaps = 2/340 (0%)
Strand = Plus / Minus
Query: 5 gaattcttccatctttccctcccctaactttttgtgattgtcttttcacagctttattgc 64
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 342 gaattcttccatctttccctcccctacctttttgtgattgtcttgtcacagctttattgc 283
Query: 65 aactggctcatacttagaaataagtcttgcaccaagattctttcatgttgctgttttccc 124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aactggcttgtacttagaaataagtcttgcaccaagattctttcatgttgctgttttccc 223
Query: 125 aaatcttctgccagaaaattttttattggatattttctttatttacatttcaaatgtttt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 222 aaatcttctgccagaaaattttttattggatattttctttatttacatttcaaatgattt 163
Query: 185 ttcctttccaggtttccccttcggaagcccccatcctatcctccctcgccctgcctccat 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tccctttccaggtttccccttcggaagcccccatcctatcctccctcgccctgcctccat 103
Query: 245 gagggtgctgctccacctacccactcactcctgtcttccc--ttccttggattcccctac 302
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct: 102 gagggtgctgctccacctacccactcactcctgtcttcccttttccttgtatttccctac 43
Query: 303 actggggcatcgaacaccctccagcccaagagcctctcct 342
||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 actggggcatcgaacaccctccagcccaagagcctctcct 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_n03.g1 MSMg01no104_n03.g1 CHROMAT_FILE:
MSMg01no104_n03.g1 PHD_FILE: MSMg01no104_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:13 2005
(421 letters)
>mm_chr3_59754752_59755572
Length = 821
Score = 791 bits (409), Expect = 0.0
Identities = 418/421 (99%)
Strand = Plus / Plus
Query: 1 caatggtagaaaagacagagttcttatgaaatttgctaaaggaaggataagaaagccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatggtagaaaagacagagttcttatgaaatttgctaaaggaaggataagaaagccaag 260
Query: 61 gttatttactcaaggattctaggaaaagagggacgctatactttacaggggcaacactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatttactcaaggattctaggaaaagagggacgctatactttacaggggcaacactaa 320
Query: 121 tgatgcatgggttttcaattagccagtgggtgggaaaggagaggtaaagagggaaatatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tgatgcatgggttttcaattagccagtgggtgggaaaggagaggtaaagaggaaaatatg 380
Query: 181 gaaaatatccattattgaagttcatgggagtatctagacaggttttctgagattgggtca 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gaaaatatccattattgaagttcatgggagtatctaggcaggttttctgagattgggtca 440
Query: 241 gactaatcaatttgaatggaaaaaataattaatcataggaacttaggaattattacgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gactaatcaatttgaatggaaaaaataattaatcataggaacttaggaattattaggaag 500
Query: 301 tccatggggctcaaaaagaactgcctaaggaggctgagaacatcagggagaagggactta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatggggctcaaaaagaactgcctaaggaggctgagaacatcagggagaagggactta 560
Query: 361 aaacaagaactgagtggacacattctcaaatatatgtattaaagaagacaatctgtggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaagaactgagtggacacattctcaaatatatgtattaaagaagacaatctgtggac 620
Query: 421 a 421
|
Sbjct: 621 a 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
