Query= MSMg01no104_o21.b1 MSMg01no104_o21.b1 CHROMAT_FILE:
MSMg01no104_o21.b1 PHD_FILE: MSMg01no104_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:22 2005
(362 letters)
>mm_chr3_68219654_68220418
Length = 765
Score = 603 bits (312), Expect = e-177
Identities = 346/358 (96%), Gaps = 3/358 (0%)
Strand = Plus / Minus
Query: 7 gaattctaacttcaggtcact-atcacactaaaaatcttttctgttggggatggttaatg 65
||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct: 564 gaattctaacttcaggtcagtaatcacactaaaaatcttttctgttggggatggtttatg 505
Query: 66 gagcacagtgatttgaacaagggaagaagagaagaaagattcatgccaagaggcatggat 125
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 gagcacaatgatttgaacaagagaagaagagaaaaaagattcatgccaagaggcatggat 445
Query: 126 gttaagtataaacagaagatacctggaccataagaagtggggacctaagggactgtcaaa 185
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 gctaagtataaacagaagatacctggacaataagaagtggggacctaagggactgtcaaa 385
Query: 186 acaaatcaatgggcataagtagtgtaagtggtcagggctcagagaaagct--agtcttcc 243
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 acaaatcaatggggataagtagtgtaagtggtcagggctcagagaaagctagagtcttcc 325
Query: 244 atattcacttgggaaggtatcctgaggcttcaccaggtccttctgcactcactcatgcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atattcacttgggaaggtatcctgaggcttcaccaggtccttctgcactcactcatgcct 265
Query: 304 ctgtaagactgaatggctaactgagtataagcattattaatagattgcgcaagaatgc 361
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 ctgtaagactgaatggctaactgagtataagcattattaatagattgtgcaagaatgc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 765
Length adjustment: 9
Effective length of query: 353
Effective length of database: 756
Effective search space: 266868
Effective search space used: 266868
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_o21.g1 MSMg01no104_o21.g1 CHROMAT_FILE:
MSMg01no104_o21.g1 PHD_FILE: MSMg01no104_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:22 2005
(560 letters)
>mm_chr3_68097202_68098158
Length = 957
Score = 965 bits (499), Expect = 0.0
Identities = 543/565 (96%), Gaps = 15/565 (2%)
Strand = Plus / Plus
Query: 1 tgtgaaggggaccagaaggaacacaacatttgggatgcaaataaataaaataattaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgtgaaggggaccagaaggaacacaacatttgggatgcaaataaataaaataattaatag 259
Query: 61 aaaaagaaagaa-tttgaacaaagatcactcgtaaagctgagacttccacatgcaggtgt 119
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 260 aaaaagaaagaaatttgaacaaagatcactcgtaaagctgagactttcacatgcaggtat 319
Query: 120 tctcctttctgtggctgtgccctcaatttccttatttctaatttgttcagggacaatgtt 179
|||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 320 tctcctttctgtggctatgccctcaatttctttatttctaatttgttcagggaaaatgtt 379
Query: 180 attctctactagaactatagttccaccattatgcagactggatgtcttactgtgaccaga 239
|||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 380 attctctactagaagtatagttcca---ttatgcagactgga-------ctgtgaccaga 429
Query: 240 atccctgtgatgaagcccttaacctaaagtgactg----tattggaaaatcaggcttctg 295
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 430 atccctgtgatgaagcccttaacctaaagtgactgactgtattggaaaatcaggcttctg 489
Query: 296 ggagacctactgaggttgaatttattaattcagagggtaagcctgtatcaagtaggcttg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggagacctactgaggttgaatttattaattcagagggtaagcctgtatcaagtaggcttg 549
Query: 356 atacagagcatgcttgctctttctccatacatgcacaagaagaggtcacatgagcacaca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atacagagcatgcttgctctttctccatacatgcacaagaagaggtcacatgagcacaca 609
Query: 416 gtgggccagcagccatcatcagttcacttgggaagctctcacagtgccgcccctttgcct 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 610 gtgggccagcagccatcatcagttcacttgggaagctctcacggtgccgcccctttgcct 669
Query: 476 ttggactttcaatccatgagactacaaagaaagcatttctgttgtttaggcgacctggtc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttggactttcaatccatgagactacaaagaaagcatttctgttgtttaggcgacctggtc 729
Query: 536 cataatgtttaccatggttgcctaa 560
|||||||||||||||||||||||||
Sbjct: 730 cataatgtttaccatggttgcctaa 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 957
Length adjustment: 10
Effective length of query: 550
Effective length of database: 947
Effective search space: 520850
Effective search space used: 520850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
