Query= MSMg01no105_f03.b1 MSMg01no105_f03.b1 CHROMAT_FILE:
MSMg01no105_f03.b1 PHD_FILE: MSMg01no105_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:55 2005
(407 letters)
>mm_chr3_60454045_60454851
Length = 807
Score = 719 bits (372), Expect = 0.0
Identities = 399/408 (97%), Gaps = 2/408 (0%)
Strand = Plus / Minus
Query: 1 cacacacacacagacacacacacacactggtgaagacatagctgtgagacatgttgcccg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cacacacacacacacacacacacacactggtgaagacatagctgtgagacatgttgcccg 575
Query: 61 aaatgacagaatccttcagaatgtattctcttcatgcttcgcaatgataatgggtttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aaatgacagaatccttcagaatgtattctcttcatgcttcgcaatgataatgggtttcac 515
Query: 121 atactcttattacccctaagggaagggccccacacaggagacaattccatctagtgcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atactcttattacccctaagggaagggccccacacaggagacaattccatctagtgcaag 455
Query: 181 tgctgacacctactggaaattccaactggcctcagttcctgtggttagctaaaaaggaag 240
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct: 454 tgctgacacctactggaaattccaactgtcctcagtttctatggttagctaaaaaggaag 395
Query: 241 aagaaagaatacacagaaacaatatattaaaggataccaatgaaaaacctttataaccca 300
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 394 aaaaaagaatacacagaaacaatatattaaaaaataccaatgaaaaacctttataaccca 335
Query: 301 aacaaaagaattataaaattgaataatgtagggcatttattcgattgaatgtactacg-t 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 334 aacaaaagaattataaaattgaataatgtagggcatttattcgattgaatgtacta-gtt 276
Query: 360 ttaaaacactgtctgtagatatactaaatcacatatttatgactataa 407
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttaaaacactgtctgtagatatactaaatcacatatttatgactataa 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_f03.g1 MSMg01no105_f03.g1 CHROMAT_FILE:
MSMg01no105_f03.g1 PHD_FILE: MSMg01no105_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:55 2005
(490 letters)
>mm_chr3_60309080_60309969
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%), Gaps = 1/490 (0%)
Strand = Plus / Plus
Query: 1 attaattgaaaagcagctccttggaaaggattaattgacatataccatatttatagacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaattgaaaagcagctccttggaaaggattaattgacatataccatatttatagacat 260
Query: 61 tttttgttttaagaattgagatagggaaactgatgaacaatagtgttttcatatttatat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tttttgttttaagaattgagatagggaaactgatgaataatagtgttttcatatttatat 320
Query: 121 ttttatgtaaacactgcgatattcttgggagaaataaaagtcctagcatatccatggtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatgtaaacactgcgatattcttgggagaaataaaagtcctagcatatccatggtta 380
Query: 181 tgttttgatacatattattaaatttttaaaaaaagcatagcagactgttatctctgtttt 240
|||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct: 381 tgttttgatacatattattaaa-tttaaaaaaaaacatagcagactgttatctctgtttt 439
Query: 241 ctatgacacagtgttagaaagttgtttgtcacatgtgcctgtgagatgcaacagtctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctatgacacagtgttagaaagttgtttgtcacatgtgcctgtgagatgcaacagtctttg 499
Query: 301 agagactttttaaaatgtagactgtttagggttctgttttgtactttccccacttttcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agagactttttaaaatgtagactgtttagggttctgttttgtactttccccacttttcaa 559
Query: 361 aggttctctctttagatttctgtgattattctttgttaagcagtacaggacacatcatct 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggttctctctctagatttctgtgattattctttgttaagcagtacaggacacatcatct 619
Query: 421 gaagactacaggaagccataatatcatcaaatatatatttcaaaaaagggaagatataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaagactacaggaagccataatatcatcaaatatatatttcaaaaaagggaagatataat 679
Query: 481 tttgaaatga 490
||||||||||
Sbjct: 680 tttgaaatga 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
