ATAATAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTAGTTCTCCCAGTAGAAACTTCAAAATAGACTTTAAT
TGACAGTTTTCATAGATAATAATGGAGTTATTTGTTAAATATATAATATA
TTGGACTGAAAATATTAGCTTGAAATAGTAACTTTAGTAGTGACTAGTAT
ATGTAGGAACTCTTCTGATATTTTACTAATTTTAAATAAATGTATATAAA
TGGATCAATTTTAGCAATATTTAGTTTACTTACTTTTTAAGATTGAAATT
TATGGATTATTATAGAATACAAGGACTCATTTGAAGAGTTTTGTCAACCA
TGATTCCTGGTTGGTTGGACTCTTTGTAAGGCAGGCTCTGCTTCTAAGGG
TAGTTGAGCATCTTAACTGTATGCACTGGAAAAAAGCAGGAAAAGAAGAA
AAAAGGCGTATTGGAGTAGGTGGGTAGGGAAGTGAGCCTGGAGAAGGAAC
ATAGTGTAGGGCTTGAGGAGGATAGGATCAGGTACATGGCATCAGATTCC
CTGTAATAATTATGGATCATAAAGTACAAGGCAAGAGAACGTATTTTCAT
AATCAGTATTGGTATCTTCAAAGTAATTCAATTTGATGCCTTGTTTTTTC
CAGCCTATACTTTTTATTTGCCTTTACAAAGCAATAAACTATGATAATGA
TGCTTACCCAAATCTAAAAAA

AATCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAGAGATGAGAAAAAAAAGAAAT
TGGAGAAAGTTATTCACATTTCTTTTGGATTATTTTTGTATAGAATACAT
AAATAGTAGGTAATATATTTATAAAATGCTTTTGTGAGGTGGAATTAAAA
ATGAGAGAAAATAACATTTAACATTTATTTATATAATGGCTAAATAATAT
CTTTGCTGTGGTAGTAACAAAACATACAATAGTGCATTTATAGTACTATA
TATAGTAATATAAAATGTAAAAAAAATATGCTGTAAAGGAGGCAGAGGAG
GAGAGCACTTAGAGAAGTGTCCTTAGGCCATTATCAGGAAGATAACTTCA
TTAATAGAAGTCAAACACTGATTTATATAGGATCACAGTGTATTAGTGCA
TACTAGTCTAAAATAACGTGACAAGTGAGGAAGTAGCCATTCTTGGTGCG
TCATTTTCCGTAGGAAATAGAAGATTAAGTTGTGAATTCGGAGGGAATTC
TGTGGGGGAAATATAAAGAGAGAGGCAAGCTGACAAACGATTATAAGTGA
ATTAATACTGTGACATCTGTGGCCATGGAAGATATAGTAAAGGAAGCACG
GATGCGTTGTTCAACCTGAAGCTGTTGGAATGGCCACAGGTTCAGGCTCT
TTGTG

Query= MSMg01no105_f21.b1 MSMg01no105_f21.b1 CHROMAT_FILE:
MSMg01no105_f21.b1 PHD_FILE: MSMg01no105_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:59 2005
         (456 letters)



>mm_chr3_48247445_48248300
          Length = 856

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaacttcaaaatagactttaattgacagttttcatagataataatggagttatttgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaaacttcaaaatagactttaattgacagttttcatagataataatggagttatttgtta 596

                                                                       
Query: 61  aatatataatatattggactgaaaatattagcttgaaatagtaactttagtagtgactag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aatatataatatattggactgaaaatattagcttgaaatagtaactttagtagtgactag 536

                                                                       
Query: 121 tatatgtaggaactcttctgatattttactaattttaaataaatgtatataaatggatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tatatgtaggaactcttctgatattttactaattttaaataaatgtatataaatggatca 476

                                                                       
Query: 181 attttagcaatatttagtttacttactttttaagattgaaatttatggattattatagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 attttagcaatatttagtttacttactttttaagattgaaatttatggattattatagaa 416

                                                                       
Query: 241 tacaaggactcatttgaagagttttgtcaaccatgattcctggttggttggactctttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tacaaggactcatttgaagagttttgtcaaccatgattcctggttggttggactctttgt 356

                                                                       
Query: 301 aaggcaggctctgcttctaagggtagttgagcatcttaactgtatgcactggaaaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaggcaggctctgcttctaagggtagttgagcatcttaactgtatgcactggaaaaaagc 296

                                                                       
Query: 361 aggaaaagaagaaaaaaggcgtattggagtaggtgggtagggaagtgagcctggagaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aggaaaagaagaaaaaaggcgtattggagtaggtgggtagggaagtgagcctggagaagg 236

                                              
Query: 421 aacatagtgtagggcttgaggaggataggatcagg 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aacatagtgtagggcttgaggaggataggatcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no105_f21.g1 MSMg01no105_f21.g1 CHROMAT_FILE:
MSMg01no105_f21.g1 PHD_FILE: MSMg01no105_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:59 2005
         (437 letters)



>mm_chr3_48107572_48108408
          Length = 837

 Score =  845 bits (437), Expect = 0.0
 Identities = 437/437 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagagatgagaaaaaaaagaaattggagaaagttattcacatttcttttggattattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagagatgagaaaaaaaagaaattggagaaagttattcacatttcttttggattattt 260

                                                                       
Query: 61  ttgtatagaatacataaatagtaggtaatatatttataaaatgcttttgtgaggtggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtatagaatacataaatagtaggtaatatatttataaaatgcttttgtgaggtggaat 320

                                                                       
Query: 121 taaaaatgagagaaaataacatttaacatttatttatataatggctaaataatatctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaatgagagaaaataacatttaacatttatttatataatggctaaataatatctttg 380

                                                                       
Query: 181 ctgtggtagtaacaaaacatacaatagtgcatttatagtactatatatagtaatataaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtggtagtaacaaaacatacaatagtgcatttatagtactatatatagtaatataaaa 440

                                                                       
Query: 241 tgtaaaaaaaatatgctgtaaaggaggcagaggaggagagcacttagagaagtgtcctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaaaaaaatatgctgtaaaggaggcagaggaggagagcacttagagaagtgtcctta 500

                                                                       
Query: 301 ggccattatcaggaagataacttcattaatagaagtcaaacactgatttatataggatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccattatcaggaagataacttcattaatagaagtcaaacactgatttatataggatca 560

                                                                       
Query: 361 cagtgtattagtgcatactagtctaaaataacgtgacaagtgaggaagtagccattcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgtattagtgcatactagtctaaaataacgtgacaagtgaggaagtagccattcttg 620

                            
Query: 421 gtgcgtcattttccgta 437
           |||||||||||||||||
Sbjct: 621 gtgcgtcattttccgta 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)