BAC Information

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BAC

Clone NameMSMg01-105H02
Chromosome3 (Build37)
Map Location 80,917,924 - 80,918,457
singlet/doubletsinglet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105H02.T7 (MSMg01no105_h02.b1)MSMg01-105H02.TJ (MSMg01no105_h02.g1)
ACCAG319795AG319796
length702712
length of high quality
(start - end)
535 (45 - 579)333 (90 - 422)
definitionCHROMAT_FILE: MSMg01no105_h02.b1 PHD_FILE: MSMg01no105_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:04 2005CHROMAT_FILE: MSMg01no105_h02.g1 PHD_FILE: MSMg01no105_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTAATCTGGAACATTTGAAAAAAATCTGTTGATTTCTTATCATT
GTTTCCTTTCTCTCATAAGAGAACTAGATTATAAAATCAAGTGTATACAC
AGTGTGCTGCAATACTTAGAGCTTGTTAAATCTTTGTTTCTGTGGTGGCA
AAATATGGAGCCAAATGAATAGAAATTTTAGTGCCCAGTGTCTGTTATTG
ACAGAAAAAAATGTTACTCATTTGACAGACAAGTATGGCAGATGACTTTG
TTCTGTTCCCACAATTAAGTAAGTTAAATCATGCTTATCACAAATCAATT
CAACACTGACCATTCTTTTAATATATGACAGAAAAATCCACTGATATAAG
CTAGAGTCAAGAAGAGCTCTTTGTAGGAGTCCCTAGGAGCAAAGAAGACT
CTTCCAGACCAAACTTCAAGCACAAGCATGGCGGTTTACCAACCTCAGGC
CTAAATTCTCTGAAGCAATAATTCAAGTGAAAGTGATTGCACATGCCTTG
TGCAAAAAATTATTACTGTGCTACGGAAAAGTATTCTATATCAACTAATG
GATTCAGCCAAAACAGAACCATACTTTATGGAATAAAGGTATAAGCCTTA
ACGTATGAAGGCAATTCCGTTGAAAAAACTATAATCTAGGTTTGTTCATC
AC
NTTACTCTCTTNCTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGCACACA
GGGAAACAGAAACCACAGTCCATAGGTCCTATGGACAATAGCTTCACACA
GGACAACAGCTTGACTGCTCTGAAGACTCAACAGTCTTAAGGCATCCCAG
AAGATCTGCTGCAGCCAATGAAACAGATCAACCACTTCTCTGCCCCTCTG
AAAACCCCACAGTTGGAAGGCCCCACAGGAGGTCTGATACAGCCAGGGCT
GCAGGACTACCAGGAGACCTGAAGCAACCCAGGACAAAAAAGTCAGACTC
CAGACAGTCACCCAGACCAGCAAACACCAGGGCTAGCCAAACGGTAAAAG
GCAAGCACAAGTACTATAAGCCACAGACGCCAATATATGTGGGCATCATT
GGTACCCAGTTCTCCCACCACAGCAAACCCTAAATACGCCAACACACCAG
ACAGCCAACCTAAAGTTCTATCTCATGAAGATAATAGAGTCCTTTAGGGA
GGATATAAATAACTGAAAGAAATATACGAAAATGCATGTAAACAAATAGA
AACTCTTAACGAGGAAATAAATAAACCCCCTTTAAAACACCCAGGAAAAC
AACCCACAAGGTGAAAGAGTTGAATAATGTGGCTCACAACCCAATAGTGG
ACGTACGAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_h02.b1 MSMg01no105_h02.b1 CHROMAT_FILE:
MSMg01no105_h02.b1 PHD_FILE: MSMg01no105_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:04 2005
         (535 letters)



>mm_chr3_80917720_80918657
          Length = 938

 Score =  998 bits (516), Expect = 0.0
 Identities = 529/534 (99%), Gaps = 3/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttaatctggaacatttg--aaaaaaatctgttgatttcttatcattgtttcc 62
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 738 gaattcagttaatctggaacatttgaaaaaaaaatctgttgatttcttatcattgtttcc 679

                                                                       
Query: 63  tttctctcataagagaactagattataaaatcaagtgtatacacagtgtgctgcaatact 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttctctcataagagaactagattataaaatcaagtgtatacacagtgtgctgcaatact 619

                                                                       
Query: 123 tagagcttgttaaatctttgtttctgtggtggcaaaatatggagccaaatgaatagaaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagagcttgttaaatctttgtttctgtggtggcaaaatatggagccaaatgaatagaaat 559

                                                                       
Query: 183 tttagtgcccagtgtctgttattgacag-aaaaaaatgttactcatttgacagacaagta 241
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 558 tttagtgcccagtgtctgttattgacagaaaaaaaatgtcactcatttgacagacaagta 499

                                                                       
Query: 242 tggcagatgactttgttctgttcccacaattaagtaagttaaatcatgcttatcacaaat 301
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 498 tggcagatgactttgttctgttcccacagttaagtaagttaaatcatgcttatcacaaat 439

                                                                       
Query: 302 caattcaacactgaccattcttttaatatatgacagaaaaatccactgatataagctaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caattcaacactgaccattcttttaatatatgacagaaaaatccactgatataagctaga 379

                                                                       
Query: 362 gtcaagaagagctctttgtaggagtccctaggagcaaagaagactcttccagaccaaact 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtcaagaagagctctttgtaggagtccctaggagcaaagaagactcttccagaccaaact 319

                                                                       
Query: 422 tcaagcacaagcatggcggtttaccaacctcaggcctaaattctctgaagcaataattca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcaagcacaagcatggcggtttaccaacctcaggcctaaattctctgaagcaataattca 259

                                                                 
Query: 482 agtgaaagtgattgcacatgccttgtgcaaaaaattattactgtgctacggaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtgaaagtgattgcacatgccttgtgcaaaaaattattactgtgctacggaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 938
Length adjustment: 10
Effective length of query: 525
Effective length of database: 928
Effective search space:   487200
Effective search space used:   487200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)