BAC Information

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BAC

Clone NameMSMg01-105O22
Chromosome3 (Build37)
Map Location 147,852,712 - 147,853,081
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105O22.T7 (MSMg01no105_o22.b1)MSMg01-105O22.TJ (MSMg01no105_o22.g1)
ACCAG320155AG320156
length707707
length of high quality
(start - end)
---380 (71 - 450)
definitionCHROMAT_FILE: MSMg01no105_o22.b1 PHD_FILE: MSMg01no105_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:43 2005CHROMAT_FILE: MSMg01no105_o22.g1 PHD_FILE: MSMg01no105_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCCGTNTACGACTCCTATAGTTCTCAAAGACGAGGAAT
TCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTATCTGTTTGCCCGTGAAATG
CCACCTT
CCATGCTAGGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAAAGAGAAAATATAATTGCCCAACTTAAA
TACATTTCTATTTATATATTATGCATTAAATACATTTGTAAAATTTTCCT
AAAGGCAGTTTTAAGGAATGATCCAGTCTAAGCAAAGCACTGACAGTTTT
GCTAAATCAATGGTTTCAAAATATCTGTGGATATAAACTTGGAAATAATT
TCTAAATAAATATATGGCAGGATAAATATAAAAAGAGATATCTAAGAGAG
AAATGTTGTCTTTGATTCATCTGAACTGGTCTCTGGCTCTTGTCAGATGC
TCATGAACAGACTTAAGAGGATTAGTCCTCACATCTTGGTCAACCACAGT
TTATGCTGTCATAATATGAAACCTGTAATGCATTAGGAACATAATAGCTT
TTAAAGAGAAAGTTCTAGGACTGGAAGAGATGTGCCAGCTTGAAAAAATA
TTTGTCACGATGCTTAAGGATCAGAGTTTGGGATTCTAACACCTAAAAAA
ATACCAAGTAAGCATGGCACCATCCTGAATTAACAGAATGCAAGAGAATA
CAAGGCAACTCCTTGTGTAGCTTAATTATTCAAAGCGCTGGATATGCCGC
CCACTCCAATTGAAAATTCCCTGGCCCCAATGTTATGAACTGAAAAACAA
AAGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_o22.g1 MSMg01no105_o22.g1 CHROMAT_FILE:
MSMg01no105_o22.g1 PHD_FILE: MSMg01no105_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:43 2005
         (380 letters)



>mm_chr3_147852664_147853443
          Length = 780

 Score =  629 bits (325), Expect = 0.0
 Identities = 362/381 (95%), Gaps = 12/381 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagagaaaatataattgcccaacttaaatacatttctatttatatattatgcattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taaagagaaaatataattgcccaacttaaatacatttctatttatatattatgcattaaa 359

                                                                       
Query: 61  tacatttgtaaaattttcctaaaggcagttttaaggaatgatccagtctaagcaaagcac 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgcatttgtaaaattttcctaaaggcagttttaaggaatgatccagtctaagcaaagcac 299

                                                                       
Query: 121 tgacagttttgctaaatcaatggtttcaaaatatctgtggatataaacttggaaataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgacagttttgctaaatcaatggtttcaaaatatctgtggatataaacttggaaataatt 239

                                                                       
Query: 181 tctaaataaatatatggcaggataaatataaaaagagatatctaagagagaaatgttgtc 240
           |||||||||||||||||| |||||||||||||||||||           |||||||||||
Sbjct: 238 tctaaataaatatatggcgggataaatataaaaagaga-----------gaaatgttgtc 190

                                                                       
Query: 241 tttgattcatctgaactggtctctggctcttgtcagatgctcatgaacagacttaagagg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 189 tttgattcatttgaactggtctctggctcttgtcagatgctcatgaacagagttaagtgg 130

                                                                       
Query: 301 attagtcctcaca-tcttggtcaaccacagtttatgctgtcataatatgaaacctgtaat 359
           ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 attagtccttactgtcttggtcaaccacagtttatgctgtcataatatgaaacctgtaat 70

                                
Query: 360 gcattaggaacataatagctt 380
           |||||||||||||||||||||
Sbjct: 69  gcattaggaacataatagctt 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)