BAC Information

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BAC

Clone NameMSMg01-106A19
Chromosome3 (Build37)
Map Location 38,436,116 - 38,436,882
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378
Downstream geneLOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A19.T7 (MSMg01no106_a19.b1)MSMg01-106A19.TJ (MSMg01no106_a19.g1)
ACCAG320238AG320239
length7711,682
length of high quality
(start - end)		41 (87 - 127)767 (96 - 862)
definitionCHROMAT_FILE: MSMg01no106_a19.b1 PHD_FILE: MSMg01no106_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:56 2005CHROMAT_FILE: MSMg01no106_a19.g1 PHD_FILE: MSMg01no106_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTGAGAATAGACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCCCTCCTGCCAGCAACAGCGTCAACCGCCCAGG
CCCCCTGGAGCTCTCAGGGACTGGACCACCAACCAAAGAATACACATGGC
AGGGACCCATGGGTAGAGTCAGATATGTGGTAGAGAATGGTCTTGTTCGA
CATCAGCGAGATGTTCGACTTTATTGACAGGACAGGCCCTTGGTTCTGAC
GCTGTTCGATGCCCCAGTGTATGTTAACGCCCGGGATGCATGACACGATT
GTCTGGTTGTCTTTTCGAATTACTCCCCCCTTTTTTTTTGTCTTTTTTCA
TATTTTCTCCTCTCCTTTCTTTCTTTTATGTTCATCTCAGCTTACCCAGT
TTCCACTTTGCCCTTTTTGTCTTCCTTTTCCTCTCCCTTTATTCCTTCGT
CTTTCGCCTCCGGCCCTATTCCTCCCTTTTCTGTTCTCCCTTCTTTGCTC
TTCCTTCTTCACGCTCCTCCTTATATTATCTCTCCCCTTTTTTCCCTCTT
ACCTCGTCTCTACTCCCCCTCCCTTTTATTTTTCTTCCTCCCTCCCTCTT
ATCTCTTCTTTCTCCTTCCTCCCTATTCTTTTTTCCCTTTTACTTTCTTT
GTTGATTTCCCCTCCTATCTCGGTTTCCTCCCTTCGCTTTCCTATCTTCC
CCTCCTTATTATTATCAACGTCGACCGGAACCTATATAATAAAGATATTC
TGCGATCACAGACTTACCTTN

NCCCTTTTTTTTTTTTAGAGGAGCGTCGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGCTT
ATTCAAACATCAGCAGAAAAATTACATGTACGTGCAGCGTGTCAGAGTTC
TGTGAGTTGTTGACTCAGTTTAGATAGCTCTGTTATGTCCTCACATTCCT
CTTTATCTTTAAGGTTAAGCTGTTCCCAGGAATGTTTTAACTACGGGGCA
TACCCAGGTTTGTTTTTCTCTTTTTCTCAGCCCCAGGCAGCCTCTAGCTC
ACAAATAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAA
ATTTCATCTTTCTTTCAAAGGCACACTTCCTTAAAGGAACAAATGAACAA
AAACAAACTTTTTTGATGGACCATTTCCAGTTCTTCCCCTGCATCATTCT
TCCATGGCACTTTCCCAACCTCTTCCTTCTCAGCCAATTGAGTTACACTA
GTCTAGAGTACGATGGGACCCTTTGAATGTAGTCTTCACTGATTCCATCT
TCTGTACATGGCAGGAAGGGTAAGGTTAAGTCAATTATAAGTTATGTTGA
GAATTTCAACCAAGGGTGTCTCAAATGACCTAACTGAAAGTTTCTTCCAC
TTTAGCCCTACAGATAATGTTCCTGGTTGAACTAAACCCCTGCCAAAGGG
ACCAGGCATAACCTCTGTTTATTTTTGGTTCAATTTTGGCTGTTCATGAG
ATTACTCAAGGAGATCCCTCACCTTCTCCCAGGGAGCTATGAAGCACCAG
CCTCCTGCCCAATACTCCAAAGCACTTCCTCCTTTGCTGGCCTGTCACTG
AGCATGAGGTCTGTGTGCCCCTGTGAGGCATGGGTGACATCCTCCACAGG
CTCCTACACTGTGCTGGCCTTTCCTGTGATTCTGGGTGTTAGGGGCTATG
GCTCTTCTAACCACAGGGCAGGGAGCCCCCCTTCTCTCTGGGGCCTCAAA
GAAATGGAGAGAAAACCCTTTCTCCCCTTGGCGAAAGAAAAAAACCTCCT
TGGCCTTTCTTATTAATTGGTGGCCCTTTCTCACGGCCCTATTTATGGGA
AAAGGGTTTCCTTCTCTCTACAAAAAATGGAAGGGGTTCCCCCGCCCCAC
TTTTTTTTTGGGTCGGGTGGGATTTTGTAAAGAAAGAAAGTAATTTATAC
CGCCGTGCTCACTCTTGCCTTCTACTAATCTTTTATATTATTTTTACTTA
ATACTACTTTTTTGTAGTCAATAGCTTTTTTCTCTTCCTCTATTTTTCAT
TTAACATATATTATATTTTTCTTTCTTACATCTTCTTGTATGTAACCTTC
TCTTTATTCCTTCCTCTTATACCTCTGATTCTTCTCTGTATAACACTTCC
ATCTTTTCCTATTCTTCTTTTNATCTCTTATTAATTTCTTGTATTCTATC
TTGACTTCTCNCTCCGTCTCATGCTGTATAACTTCTATCTCCTCTATCAT
TTCACATATACTATTATGTATCTATCTCATTANCTTNTCCNNTACTCCCT
CNAACATATTATATATTTCATATCTCTTATTTTAGTNANGTTNNTNTGTN
NNNNNNNNCNCTATATGCTGAGCTATGACATTCTGTCTTCTATCTACTAN
TNNNNTTTTATTNNNTATGTCATCTTATNTNC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a19.g1 MSMg01no106_a19.g1 CHROMAT_FILE:
MSMg01no106_a19.g1 PHD_FILE: MSMg01no106_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:56 2005
         (767 letters)



>mm_chr3_38435916_38437082
          Length = 1167

 Score = 1475 bits (763), Expect = 0.0
 Identities = 766/767 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcttattcaaacatcagcagaaaaattacatgtacgtgcagcgtgtcagagttctgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcttattcaaacatcagcagaaaaattacatgtacgtgcagcgtgtcagagttctgtga 260

                                                                       
Query: 61  gttgttgactcagtttagatagctctgttatgtcctcacattcctctttatctttaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgttgactcagtttagatagctctgttatgtcctcacattcctctttatctttaaggt 320

                                                                       
Query: 121 taagctgttcccaggaatgttttaactacggggcatacccaggtttgtttttctcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagctgttcccaggaatgttttaactacggggcatacccaggtttgtttttctcttttt 380

                                                                       
Query: 181 ctcagccccaggcagcctctagctcacaaataaccagcaatttctgagtactttatatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagccccaggcagcctctagctcacaaataaccagcaatttctgagtactttatatga 440

                                                                       
Query: 241 cttacaggtcttgaaatttcatctttctttcaaaggcacacttccttaaaggaacaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttacaggtcttgaaatttcatctttctttcaaaggcacacttccttaaaggaacaaatg 500

                                                                       
Query: 301 aacaaaaacaaacttttttgatggaccatttccagttcttcccctgcatcattcttccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaaaaacaaacttttttgatggaccatttccagttcttcccctgcatcattcttccat 560

                                                                       
Query: 361 ggcactttcccaacctcttccttctcagccaattgagttacactagtctagagtacgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcactttcccaacctcttccttctcagccaattgagttacactagtctagagtacgatg 620

                                                                       
Query: 421 ggaccctttgaatgtagtcttcactgattccatcttctgtacatggcaggaagggtaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaccctttgaatgtagtcttcactgattccatcttctgtacatggcaggaagggtaagg 680

                                                                       
Query: 481 ttaagtcaattataagttatgttgagaatttcaaccaagggtgtctcaaatgacctaact 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 ttaagtcaattataagttatgttgagaatttcaaccaagggggtctcaaatgacctaact 740

                                                                       
Query: 541 gaaagtttcttccactttagccctacagataatgttcctggttgaactaaacccctgcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaagtttcttccactttagccctacagataatgttcctggttgaactaaacccctgcca 800

                                                                       
Query: 601 aagggaccaggcataacctctgtttatttttggttcaattttggctgttcatgagattac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagggaccaggcataacctctgtttatttttggttcaattttggctgttcatgagattac 860

                                                                       
Query: 661 tcaaggagatccctcaccttctcccagggagctatgaagcaccagcctcctgcccaatac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tcaaggagatccctcaccttctcccagggagctatgaagcaccagcctcctgcccaatac 920

                                                          
Query: 721 tccaaagcacttcctcctttgctggcctgtcactgagcatgaggtct 767
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tccaaagcacttcctcctttgctggcctgtcactgagcatgaggtct 967


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 767
Length of database: 1167
Length adjustment: 10
Effective length of query: 757
Effective length of database: 1157
Effective search space:   875849
Effective search space used:   875849
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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