BAC Information

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BAC

Clone NameMSMg01-106A20
Chromosome3 (Build37)
Map Location 138,543,196 - 138,543,855
singlet/doubletsinglet
Overlap geneTspan5
Upstream geneDnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, LOC620771
Downstream geneRap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A20.T7 (MSMg01no106_a20.b1)MSMg01-106A20.TJ (MSMg01no106_a20.g1)
ACCAG320240AG320241
length1,2841,316
length of high quality
(start - end)
660 (71 - 730)495 (132 - 626)
definitionCHROMAT_FILE: MSMg01no106_a20.b1 PHD_FILE: MSMg01no106_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:56 2005CHROMAT_FILE: MSMg01no106_a20.g1 PHD_FILE: MSMg01no106_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGTG
TAGCTAAGGATCCCTCTTAAACTTCCACTCCTTGCACCTCCATCCCAAAG
GGCCCCGGCCACCAGCTTGTATGCCCAGGAAATAGCTGGAATCCCCCCTG
CTCTTGTGCTGCGTTTCTTTGTCTTTTTTAAGATTTATTTATTTTATGTA
TATGAGTACACTGTAACTGTCTACAGACACACCAGAAGAGAACATAGGAT
CCCATTACAGATGTTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTC
AGGACCTCTGGAAGAGCAGTTAATGCTCTTAACCTCTGAGCCATCTCTTT
AGCCCCCATGTGATGTTTTTCTTAAGCACCACCTTTGTATTTCTCCATGT
GGTAAAAATTAGCCCGACACATGGTTGTACGTGGCTCTGTGGCTCTCGGT
GTGCACTTTCCTAGCTCTGGTCCCCAGAGAGAAGAGCCAGTCATAAATGT
CTGCATCCCAGCGGGAGGACTTGAGACTTCCCTGCTCTCTGGGGTGGGGA
GGGGCTCTGGAGAAGCTGGGGAGCACTGACAGGGATGAAGAGGATGAAGA
GGAGGAGTCCCCACAGAAGAGGGTGGGCGCCACAGGTTTCTGGTAACCAG
GTAACTGCTGTTTTCTCATCACAGGCTCCTCAGGATTCACTGCAGATCTA
AGCACCTACTCTACACTTGGCTGACTTACCTGTGACCTTAGAGTTGTGGG
GTTTTTTTTTTTAAGCTTGCATTATCATTATTATTCCAGCAGGCATGGAC
TAGCACTTCTTCCTAATTTGTCATATTCGGCTCCCCAGAATTAAAAGTCC
AGGGAGAGCGCCTCACGCTTTTTGACACCCGAAAATAGACGCCTTGGTTC
CCATCACTTTTTGTATTCTAAAAAATGAGGAATGTATGCCGGTTGTTTTG
AAAGCCCGGTGTAATGGAAAAATAAAACCTGTTCTTCTAAACTATTATTG
ACCCGATGGTAAGCTTTCGCCCTGTTTTTCCTTCCGCATTGAAATTTTCA
AACCTTCTTCCCCGGTGGAACATAAAGCTTTTCTTGAATATTCTCTTTTT
GTTTTAAATAAATATCTAAACTGGGGCTTGTGCATTATTTTTCTCCCTCC
CCAAAAAAAATTTAATTGTGTGGGGTAAACACAGGGGTTTTATTGTGATT
ATTATCTTTTTTCCTCCTTACACTTACTCTATTCTTTCTCTCTCCTCTCC
TTTATTAAATATTCTCTCTCCTTTCTTGTGTTTG
TTTCCAATATTTTTTTTTTACATGGNAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAACACATTGA
AAAAAGCCAGTGGTGTCAGTCACTCCCAATGTCTGCGTGTAGAAGATTCT
TACTTTTCGCTATGCACAAAACTCAAGTATAAATAGATGAAAGACCTTAC
CAGAAACCCAGGAGGTACACTGAACCTCTTGACAAAAGAGAAAGTGGAGA
ATGGCCTTGAACTTGCTACATAGTAAAAAGCTTTCAGAACAAAACACCAT
TGGCACAGTTATTACTAAAGTAAGTTGTGACCTCATGAAACTGAAAAGCT
TCTGCATGGCTAAAGACACTGTCATTAGGACAGAGCAGCATCCTACAGAT
AGGGAAAGGTTTTCATCAACTGTATATCTGATAAAGGGCAAATATCCAAA
CTGTATAAAGAACTTAATGTTCTAGATGTAAAGAAAGGCCAACAACAGTG
GGGTCTAGATCTAAATAGAGAATTAGCAATACAGGAAACACTTAAAGAAA
TATTCAACATCCTTAGGCATCCGGGAAATATGCAAATCAAACGTACTTTG
AGATTTCATTTTCACCGGTTGGAATGGCCAAGGTCAGTGAAACAAGTGAT
AGCTCACGCTGGTGTGGATAAGGAGAATAATACACGCATCCATTACTGCC
GGGACGGCAACCTTGTACACCTTTGGAAATCATCAAAGCACTTGCCTGGG
AAGAGTTGAATTGATCTTTTCTAAGATCCAGCCATACCATTCTTTGTCAT
GTGCCAAATTCTGTTTCATCCTACCACAAAGATTCAACCTTGTTTATTGC
TACCCTATTCCCCATAACCTTTTTCCCTTTTTTTTTTTTTCACTTGTTTA
AATACAATGGGGGTGCATTCCCCACAGTGGCAACATTAACTTATCCCACT
TTTTAAAGTGTTTACCTAAAATTTTTGCTAATAAATCTAATGTTATTGGT
TTGGATGGTCTTTTCCTTTAAAGTGATTATCCTTTGATCCTATTAACTAA
AAACTTATTTTTTAGTATTTCTCTTTTAACTGTGTCCATTTTATTTTTTA
AAATTTACGGAATAACCCTTGTCTTGTTATCCCTATAATTAACCTCTCAT
ATTGTTTTGGGTTATTTTCTTATAAGGTTAATACAATGGCGGATAAAGGT
TTCTACTTCTCTGTTTTTATAATAAGTGGTGGCGACAATATACACTCGTG
TTACTTCTTGTGCCTTGTGTGTACNTTCTCTCTCTCTCTCTACTAATGTG
TACTCTAGTATTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a20.b1 MSMg01no106_a20.b1 CHROMAT_FILE:
MSMg01no106_a20.b1 PHD_FILE: MSMg01no106_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:56 2005
         (660 letters)



>mm_chr3_138542996_138544055
          Length = 1060

 Score = 1168 bits (604), Expect = 0.0
 Identities = 646/660 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttccactccttgcacctccatcccaaagggccccggccaccagcttgtatgcccagga 60
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 201 acttccactccttgcacctccatcccaaagggcgggggccaccagcttgtatgcccagga 260

                                                                       
Query: 61  aatagctggaatcccccctgctcttgtgctgcgtttctttgtcttttttaagatttattt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aatagctggaatcccccctgctcttgtgctgcttttctttgtcttttttaagatttattt 320

                                                                       
Query: 121 attttatgtatatgagtacactgtaactgtctacagacacaccagaagagaacataggat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 attttatgtacatgagtacactgtaactgtctacagacacaccagaagagaacatcggat 380

                                                                       
Query: 181 cccattacagatgtttgtgagccaccatgtggttgctgggatttgaactcaggacctctg 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccattacagacgtttgtgagccaccatgtggttgctgggatttgaactcaggacctctg 440

                                                                       
Query: 241 gaagagcagttaatgctcttaacctctgagccatctctttagcccccatgtgatgttttt 300
           |||||||||| | ||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 441 gaagagcagtcagtgctcttgacctctgagccatctctctagcccccatgtggtgttttt 500

                                                                       
Query: 301 cttaagcaccacctttgtatttctccatgtggtaaaaattagcccgacacatggttgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttaagcaccacctttgtatttctccatgtggtaaaaattagcccgacacatggttgtac 560

                                                                       
Query: 361 gtggctctgtggctctcggtgtgcactttcctagctctggtccccagagagaagagccag 420
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 gtggctccgtggctctcggtgtgcactttcctagctctggtccccagagagaagagccgg 620

                                                                       
Query: 421 tcataaatgtctgcatcccagcgggaggacttgagacttccctgctctctggggtgggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcataaatgtctgcatcccagcgggaggacttgagacttccctgctctctggggtgggga 680

                                                                       
Query: 481 ggggctctggagaagctggggagcactgacagggatgaagaggatgaagaggaggagtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggctctggagaagctggggagcactgacagggatgaagaggatgaagaggaggagtcc 740

                                                                       
Query: 541 ccacagaagagggtgggcgccacaggtttctggtaaccaggtaactgctgttttctcatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccacagaagagggtgggcgccacaggtttctggtaaccaggtaactgctgttttctcatc 800

                                                                       
Query: 601 acaggctcctcaggattcactgcagatctaagcacctactctacacttggctgacttacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaggctcctcaggattcactgcagatctaagcacctactctacacttggctgacttacc 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)