Query= MSMg01no106_b18.b1 MSMg01no106_b18.b1 CHROMAT_FILE:
MSMg01no106_b18.b1 PHD_FILE: MSMg01no106_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:04 2005
(666 letters)
>mm_chr3_139601219_139602283
Length = 1065
Score = 1195 bits (618), Expect = 0.0
Identities = 656/672 (97%), Gaps = 7/672 (1%)
Strand = Plus / Plus
Query: 1 aacacacactcagttcttactcttatctattatcccttacaccactagaaacagtgtcag 60
|||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct: 195 aacacacactcagttcttactcttatctattatcacaaacaccactagaaacagagtcag 254
Query: 61 ttcacagggcaaaatgaaacagaacaaaatgataatcaggaaaggagcgagtgatctgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttcacagggcaaaatgaaacagaacaaaatgataatcaggaaaggagcgagtgatctgac 314
Query: 121 ttcgattttcctctccacttcctacttgccagtgccaggtttgacactgaagtaacacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttcgattttcctctccacttcctacttgccagtgccaggtttgacactgaagtaacacaa 374
Query: 181 ttaccattaatttgaagatcaccatgcataaggtagatatgataaaaaa------caaaa 234
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 375 ttaccattaatttgaagatcaccatgcataaggtagatatgataaaaaaacaaaacaaaa 434
Query: 235 caaaacaaaacaaaacatgtcctgatggcatttttataaagtttttagtttgtgtaggtg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caaaacaaaacaaaacatgtcctgatggcatttttataaagtttttagtttgtgtaggtg 494
Query: 295 tgtgtgtgtgtgtacacatgtaagtgaacatttgactatcatgacacatatgttggaagg 354
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 495 tgtgtgtgtgtgtacacatgtaagtgaacatttaactatcatgacacatatgttggaagg 554
Query: 355 ccagaggacaacttgcagaaataggttctcacctcccatggtaacaggcaaaggtaccaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccagaggacaacttgcagaaataggttctcacctcccatggtaacaggcaaaggtaccaa 614
Query: 415 actcaagtagccaggcttggcagcaagtgcctctcctcattgagcacccttggttggcat 474
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 actcaagtagccaggcttggcagcaagtgcctctcctcattgagtacccttggttggcat 674
Query: 475 gactggatctttagcgtacttcactgcaatgactatcctgttctattttaacactgaaaa 534
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gactggatctttagagtacttcactgcaatgactatcctgttctattttaacactgaaaa 734
Query: 535 gagtttggtggctttataaatactgaagtatacaaaagcacaagatgatcttagagaata 594
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 735 gagtttggtga-tttataaatactgaagtatacagaagcacaagatgatcttagagaata 793
Query: 595 actgggctttgttaatgaaatgctctttgcaggacatttgtttttctctctcctaaagtg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 actgggctttgttaatgaaatgctctttgcaggacatttgtttttctctctcctaaagtg 853
Query: 655 aacatttgtgtg 666
||||||||||||
Sbjct: 854 aacatttgtgtg 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_b18.g1 MSMg01no106_b18.g1 CHROMAT_FILE:
MSMg01no106_b18.g1 PHD_FILE: MSMg01no106_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:04 2005
(336 letters)
>mm_chr3_139774206_139774939
Length = 734
Score = 543 bits (281), Expect = e-159
Identities = 317/329 (96%), Gaps = 2/329 (0%)
Strand = Plus / Minus
Query: 8 cccccctatttgaaatgatctattatgtttagaatgtggcagagaaaaactgttcacccc 67
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cccccc-atttgaaatgttctattatgtttagaatgtggcagagaaaaactgttcacccc 476
Query: 68 ctcattagaaaagaaaggatgaagccaaagagactcaaagtccctctgtcatcttttaaa 127
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 475 ctcattagaaaagaaaggatgaagccaaagagactcaaaatccctctgtcatcttttaaa 416
Query: 128 gggtgtcaccagtgacctagtactttctcctgagacctcaatttaaatctctagcacttc 187
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gggcgtcactagtgacctagtactttctcctgagacctcaatttaaatctctagcacttc 356
Query: 188 tatgtgatactgttgtgcccccgagtccatggtaaacccagacaagcccaagaatttcga 247
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 355 tatgtgatactgttgtg-ccctgagttcatggtaaacccagacaagcccaagaatttcga 297
Query: 248 aggttgctgcaactcgaaaaagagtcttatattatttcttgttcgaacttggatcgcctg 307
| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 296 aagttgctgcaactcgaaaaagagtcttatattgtttcaagttcgaacttggatcgcctg 237
Query: 308 ccttgcacttactgtgtgaatgctggcaa 336
|||||||||||||||||||||||||||||
Sbjct: 236 ccttgcacttactgtgtgaatgctggcaa 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 734
Length adjustment: 9
Effective length of query: 327
Effective length of database: 725
Effective search space: 237075
Effective search space used: 237075
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
