MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-106E07
Chromosome	3 (Build37)
Map Location	102,365,808 - 102,366,307
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb
Downstream gene	Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
Link	Open Mouse BAC browser

Click to get alignment info.

name	Atp1a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11928 MGI:88105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043036 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	BC037703 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242125 MGI:2446273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc22a15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242126 MGI:3607704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 3 Proteins

name	Nhlh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18072 MGI:97324
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043047 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Casq2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12373 MGI:1309469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vangl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229658 MGI:2159344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433633 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433633 MGI:3648208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Ngfb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18049 MGI:97321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tspan2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70747 MGI:1917997
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tshb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22094 MGI:98848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sycp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20957 MGI:105931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668425 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668425
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100043517 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043517
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Nr1h5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381463 MGI:3026618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	5730470L24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66641 MGI:1913891
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Csde1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229663 MGI:92356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nras (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18176 MGI:97376
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ampd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229665 MGI:88015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dennd2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329727 MGI:3036254
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bcas2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68183 MGI:1915433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94093 MGI:2137357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Atp1a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450276 GeneID:11928 MGI:88105
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, Na+/K+ transporting, alpha 1 polypeptide transcript_id : NM_144900.1

name	LOC100043036 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251340 GeneID:100043036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100043036 transcript_id : XM_001479386.1

name	BC037703 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801943 GeneID:242125 MGI:2446273
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC037703 transcript_id : NM_172295.3

name	Slc22a15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251342 GeneID:242126 MGI:3607704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 3 Proteins product : solute carrier family 22 (organic anion/cation transporter), member 15 transcript_id : XM_001002464.2

name	Nhlh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341049 GeneID:18072 MGI:97324
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nescient helix loop helix 2 transcript_id : NM_178777.2

name	LOC100043047 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251344 GeneID:100043047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to CG2839-PA transcript_id : XM_001479402.1

name	Casq2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753291 GeneID:12373 MGI:1309469
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calsequestrin 2 transcript_id : NM_009814.1

name	Vangl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142358232 GeneID:229658 MGI:2159344
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vang-like 1 (van gogh, Drosophila) transcript_id : NM_177545.3

name	EG433633 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82890768 GeneID:433633 MGI:3648208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG433633 transcript_id : XM_485288.3

name	Ngfb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305312 GeneID:18049 MGI:97321
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nerve growth factor, beta transcript_id : NM_013609.1

name	Tspan2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608156 GeneID:70747 MGI:1917997
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 2 transcript_id : NM_027533.2

name	Tshb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678442 GeneID:22094 MGI:98848
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid stimulating hormone, beta subunit transcript_id : NM_009432.1

name	Sycp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45597448 GeneID:20957 MGI:105931
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptonemal complex protein 1 transcript_id : NM_011516.1

name	Nr1h5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348549 GeneID:381463 MGI:3026618
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 1, group H, member 5 transcript_id : NM_198658.1

name	Nr1h5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42491367 GeneID:381463 MGI:3026618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 1, group H, member 5 transcript_id : NM_201622.1

name	Nr1h5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42491363 GeneID:381463 MGI:3026618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 1, group H, member 5 transcript_id : NM_201619.1

name	5730470L24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803299 GeneID:66641 MGI:1913891
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730470L24 gene transcript_id : NM_025679.3

name	Csde1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254097 GeneID:229663 MGI:92356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cold shock domain containing E1, RNA binding transcript_id : NM_144901.2

name	Nras (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111154108 GeneID:18176 MGI:97376
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuroblastoma ras oncogene transcript_id : NM_010937.2

name	Ampd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431239 GeneID:229665 MGI:88015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenosine monophosphate deaminase 1 (isoform M) transcript_id : NM_001033303.2

name	Dennd2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46849717 GeneID:329727 MGI:3036254
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DENN/MADD domain containing 2C transcript_id : NM_177857.1

name	Bcas2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116686103 GeneID:68183 MGI:1915433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast carcinoma amplified sequence 2 transcript_id : NM_026602.3

name	Trim33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637827 GeneID:94093 MGI:2137357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 33 transcript_id : NM_053170.2

name	Trim33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637829 GeneID:94093 MGI:2137357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 33 transcript_id : NM_001079830.1

name	Atp1a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450277 CCDS:CCDS17683.1 GeneID:11928 MGI:88105
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0005792 - microsome [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0042383 - sarcolemma [Evidence IDA]; GO:0005890 - sodium:potassium-exchanging ATPase complex [Evidence ISS] GO_function : GO:0003869 - 4-nitrophenylphosphatase activity [Evidence IMP]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015077 - monovalent inorganic cation transporter activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0005391 - sodium:potassium-exchanging ATPase activity [Evidence ISS] [Evidence IMP] GO_process : GO:0015991 - ATP hydrolysis coupled proton transport [Evidence ISS]; GO:0008217 - blood pressure regulation [Evidence IGI]; GO:0002026 - cardiac inotropy [Evidence IMP]; GO:0030641 - hydrogen ion homeostasis [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0015672 - monovalent inorganic cation transport [Evidence IEA]; GO:0045822 - negative regulation of heart contraction [Evidence IMP]; GO:0045823 - positive regulation of heart contraction [Evidence IMP]; GO:0006813 - potassium ion transport [Evidence ISS]; GO:0006814 - sodium ion transport [Evidence ISS]; GO:0030317 - sperm motility [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : Na+/K+ -ATPase alpha 1 subunit protein_id : NP_659149.1

name	LOC100043036 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251341 GeneID:100043036
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479436.1

name	BC037703 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982050 CCDS:CCDS17684.1 GeneID:242125 MGI:2446273
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC242125 protein_id : NP_758499.2

name	Slc22a15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251343 GeneID:242126 MGI:3607704
definition	codon_start : 1 product : solute carrier family 22 (organic cation transporter), member 15 protein_id : XP_001002464.2

name	Nhlh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520253 CCDS:CCDS17685.1 GeneID:18072 MGI:97324
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007617 - mating behavior [Evidence IMP]; GO:0042698 - menstrual cycle [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nescient helix loop helix 2 protein_id : NP_848892.1

name	LOC100043047 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251345 GeneID:100043047
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479452.1

name	Casq2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753292 GeneID:12373 MGI:1309469
definition	GO_component : GO:0016529 - sarcoplasmic reticulum [Evidence TAS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0006937 - regulation of muscle contraction [Evidence TAS] codon_start : 1 exception : mismatches in translation function : calcium binding protein note : cardiac calsequestrin product : calsequestrin 2 protein_id : NP_033944.1

name	Vangl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29164511 CCDS:CCDS17686.1 GeneID:229658 MGI:2159344
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 exception : mismatches in translation note : loop-tail protein 2 product : vang, van gogh-like 1 protein_id : NP_808213.1

name	EG433633 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51708328 GeneID:433633 MGI:3648208
definition	codon_start : 1 product : similar to X83328 protein protein_id : XP_485288.1

name	Ngfb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305313 CCDS:CCDS17687.1 GeneID:18049 MGI:97321
definition	GO_function : GO:0008083 - growth factor activity [Evidence IEA]; GO:0005057 - receptor signaling protein activity [Evidence IDA] GO_process : GO:0007422 - peripheral nervous system development [Evidence IMP]; GO:0045664 - regulation of neuron differentiation [Evidence IDA]; GO:0019233 - sensory perception of pain [Evidence IMP] codon_start : 1 product : nerve growth factor, beta protein_id : NP_038637.1

name	Tspan2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608157 CCDS:CCDS17688.1 GeneID:70747 MGI:1917997
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : tetraspan 2 protein_id : NP_081809.2

name	Tshb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678443 CCDS:CCDS17689.1 GeneID:22094 MGI:98848
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : thyrotropin product : thyroid stimulating hormone, beta subunit protein_id : NP_033458.1

name	Sycp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45597449 GeneID:20957 MGI:105931
definition	GO_component : GO:0000801 - central element [Evidence IDA]; GO:0000800 - lateral element [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA]; GO:0000795 - synaptonemal complex [Evidence IDA]; GO:0000802 - transverse filament [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0019904 - protein domain specific binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007130 - synaptonemal complex formation [Evidence IEA] [Evidence IDA] codon_start : 1 exception : mismatches in translation product : synaptonemal complex protein 1 protein_id : NP_035646.1

name	Nr1h5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42491368 GeneID:381463 MGI:3026618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 5 is encoded by transcript variant 5 product : nuclear receptor subfamily 1, group H, member 5 isoform 5 protein_id : NP_963916.1

name	Nr1h5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42491364 GeneID:381463 MGI:3026618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : nuclear receptor subfamily 1, group H, member 5 isoform 2 protein_id : NP_963913.1

name	Nr1h5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348550 GeneID:381463 MGI:3026618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : nuclear receptor subfamily 1, group H, member 5 isoform 1 protein_id : NP_941060.1

name	5730470L24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385140 CCDS:CCDS17690.1 GeneID:66641 MGI:1913891
definition	codon_start : 1 product : hypothetical protein LOC66641 protein_id : NP_079955.1

name	Csde1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450287 GeneID:229663 MGI:92356
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : NRAS-related product : upstream of NRAS protein_id : NP_659150.1

name	Nras (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111154109 GeneID:18176 MGI:97376
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0050875 - cellular physiological process [Evidence IEA]; GO:0007265 - Ras protein signal transduction [Evidence TAS]; GO:0000074 - regulation of progression through cell cycle [Evidence TAS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : neuroblastoma ras oncogene protein_id : NP_035067.2

name	Ampd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431240 GeneID:229665 MGI:88015
definition	GO_function : GO:0003876 - AMP deaminase activity [Evidence IEA] GO_process : GO:0006144 - purine base metabolism [Evidence IEA]; GO:0009168 - purine ribonucleoside monophosphate biosynthesis [Evidence IEA] codon_start : 1 note : AMP deaminase 1 product : adenosine monophosphate deaminase 1 (isoform M) protein_id : NP_001028475.2

name	Dennd2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46849718 GeneID:329727 MGI:3036254
definition	codon_start : 1 product : DENN/MADD domain containing 2C protein_id : NP_808525.1

name	Bcas2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906453 CCDS:CCDS17691.1 GeneID:68183 MGI:1915433
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : breast carcinoma amplified sequence 2 protein_id : NP_080878.2

name	Trim33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119637828 GeneID:94093 MGI:2137357
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : tripartite motif protein 33 isoform 1 protein_id : NP_444400.2

name	Trim33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119637830 GeneID:94093 MGI:2137357
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : tripartite motif protein 33 isoform 2 protein_id : NP_001073299.1

name	LOC668425 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668425
definition	number : 1 pseudo : _no_value

name	LOC100043517 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043517
definition	number : 1 pseudo : _no_value

clone name	MSMg01-534D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273M01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-136H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134P17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-512P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-388I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305M11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-106E07.T7 (MSMg01no106_e07.b1)	MSMg01-106E07.TJ (MSMg01no106_e07.g1)
ACC	AG320402	AG320403
length	776	1,524
length of high quality (start - end)	---	503 (89 - 591)
definition	CHROMAT_FILE: MSMg01no106_e07.b1 PHD_FILE: MSMg01no106_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:27 2005	CHROMAT_FILE: MSMg01no106_e07.g1 PHD_FILE: MSMg01no106_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:27 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	AGGGAGATCGGAATTGAGGCCGCTATACGAGGCCTATTCCGAGAGGATGA GCGGAATTCTTATCTTTCCCAACAGCTAAGCCTGAGATTCTTGATAGGCT GAAGCTGTCAGCCTGCTGTACCGAACCCGGAGATTGCAGGGCCTGAGAAG CACTCAGGAGGGGATCTGTTAAAGTAGTATATCAAGATCAATCCATATTT AAGGCTTACCCCCGCCCGTTCGAGTGTTATAGCGCTTTCTCGTCTTTAAT GAGCTCTTACCTTTTACTATATAGTTTTGATGGGCCGAGCTAGCCCAGTC CACATACACATCGTATTCCACATTCTTCTTGCCTGCTGGGATTTTTTGTT TTTGCACTTTGCTCCATCTTGTAAATATACTCTCTATCACATCACTTTCT CTTCTTGTACTATACTTATATCCCACCCCCTCGTCCTCTCTCATCTTCCC TTTCTATTTCCTCCCCCTTCTTTTCACCCATTAACTAATCGTCTCTACTT CCGACTACCATTCTTCTCGCTCAGCCTTATTAAATTACTTCCGCATAATC TCCACTTCGCCAATTCTCGTTTCTCCCTTCTCTTTTTATTTTCATCTTCG CTCCCTATTTACTGATCAACACCTCTTCCCACCTCGAATGATAGCACATA ACATACGTTTAACCTCCCCCCACTTCAGCCTTATCTCGCTTCCTATTCGA TATTACCCCCCCACCTTATATTATTAACACCTCGATCACATCCATCATAC ACGTCGCTTACCTTCTATCGAAATTN	TACTTTTTCCTCGATGGAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXACAGTGCCGTTCAACGAGTAAGAGCCCAC CAAGCACAGGGCACAGGGACTCGGGAGCATTTCCCTGAGACATGGGACTT TATGTGCCAGAGTACCTCAGAGGTGGGTTAAACCTAGGATTAGAGGAGTT TATAAAAGCACTGAAAAGCAGGGACTGGCAGAACGAAGCTGAGAGGACAG ATTGACCACGATAGATGCTAGATGAGAAGATGGGAAATCTTTAGGAACAG GTGATGGTTCAGTAGGTGACAGCCTTTGTGACACAAGCAACATAAAAAGC CAGGCATCATCATGTGTGGTCATGTGTGATCATGTGTGGTCATATATGCT TGTAATCACAGCACTGTTGATTGAGGGGCAGAGACCTTAAGATCTTAGGA ACTGGCTGGCCATTAGCTGAACACCGTGTTCAGTGGGGGGGGGGGCTGTC TCAAAGAGATATGGAAGAGCATGCTAGAGCAAGACATCAGATGTCATCTG ACTTCCATGCATAGATGTACATGCCTGTACATGCACACACAAACACACGC ACACACATAGACACACCCATGTGCATGCATATATACTCACAAACATGCAT AAACACACATACACTCATACAGAATTATAAAGTGAAGGGTGGCTCTCCTG CAGAGGCCATGGCTGTAATAGAAGGGCTGTTAGAGAAATATTTTGCTGAT TGGCTTAGGGCTAACAGAACACTGTTGTAATAGAGGCCAGGTGGTAGCAT TTGTTAATGTCTCTTTAATCATCTAATTTCTTTTCTAATAGACTTTTCAG GAATATTTTATGGGACTACCATTCCTAAGCTTTTGTCCAGTTGTAACTTT TGAAGTGTCTGTTTTGTTTGGTTTTGGATTTTGTTTCTCTTTTTCAACCT TCTTTATTAGCTTTTCTCTTATATTTCACCTTTCATTGTTATTCCTCATC TTCTCTTCTTCACTCTCCTTTTCTTTTTTTTTGACCTCTTTATATCTTCT TTATTTCTCTCTTCTCTCTTCCTCTCTTTTTGCTATCCTGCATCTCTTAC ATCTTTTTTTCTTTATATTCTTTCTCTCTTTTTTTATCTATCTTTCTTTT CTCTTCACTTTCTTTTCCTTGCTCTTTTTCTTCCTTTATTTACTTTCCTC TGTGTCTTTTCTTTTTCTTTTTCTTCTCTCTTTCTTTCTTTCTTTCTCTT TCCTTTCTTCCTTTCTCTTTTTTCATTCCTCTTCTTTTTCCATCTTTTTT TTCCTTACATTCTCACCTTTTTTTACTTTCCTCACTTCTTTTACTTCTTC ACTTCTATCTCTTCTCTATGTCTCCTCTCTCTCTTTTTTCTTATATCGTA TATATCTCTCTCATTTTCTTCCTTTACTTCTGTCTCTAACGTTCATCTTC TCACTCTCCTACGCTTTCTGCTCATCTCCTCTCGTTCTTCCTCCTTTCTC TGCTCTTATCTTTCTCTCTCTTCC
quality values	Open. Hide. 6 8 6 6 8 6 6 7 7 6 7 9 14 8 8 8 9 9 9 11 15 23 19 18 9 9 9 10 9 9 9 9 9 9 9 10 8 9 8 6 6 10 13 14 15 12 10 10 10 12 15 15 11 12 10 16 21 18 20 20 21 21 15 18 11 12 15 13 16 11 9 9 9 9 9 9 14 16 19 15 19 16 21 15 13 14 23 18 21 11 11 10 13 8 8 8 10 10 8 8 8 10 12 12 14 19 15 20 10 8 6 6 8 12 17 32 28 24 19 15 17 12 10 9 9 9 9 10 16 10 10 6 6 8 8 8 8 10 10 8 10 10 10 10 15 14 17 16 16 15 11 10 10 10 10 10 16 11 11 11 12 11 13 18 16 10 10 10 10 10 8 8 8 8 8 8 8 8 9 10 10 13 10 8 8 8 8 6 8 8 10 11 10 10 10 10 13 13 18 13 13 11 9 9 9 9 10 15 22 22 10 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 10 10 10 10 8 8 8 8 7 7 8 8 8 9 8 8 9 9 9 10 10 10 10 10 8 8 9 9 9 11 11 8 8 6 6 8 8 8 6 6 6 6 6 6 16 12 12 12 10 13 10 13 13 10 11 8 8 8 8 8 8 12 12 12 8 8 8 8 6 6 8 8 10 12 12 12 12 12 11 11 12 12 12 18 11 11 11 9 9 8 8 8 8 8 8 8 8 8 8 6 6 10 10 8 6 8 6 6 8 8 11 15 8 6 6 6 8 10 16 15 15 10 10 9 10 10 10 8 10 8 9 9 11 10 10 10 10 10 10 8 8 8 10 8 8 8 8 8 8 8 10 6 6 8 8 9 9 8 8 8 8 8 9 11 11 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 6 8 6 6 8 8 8 8 8 8 8 8 8 10 10 8 8 9 10 10 8 8 8 8 6 6 6 6 6 6 8 6 11 18 16 11 10 10 10 9 8 8 8 8 10 10 8 8 10 12 10 10 10 8 8 8 6 10 9 9 11 12 10 8 8 6 6 8 8 12 11 12 8 8 6 6 8 8 8 8 6 6 8 8 8 8 8 8 10 11 11 11 11 11 11 16 13 16 13 11 11 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 13 11 11 11 14 15 19 9 9 8 8 8 8 8 8 12 11 8 8 8 8 8 8 6 6 6 8 8 8 9 10 10 10 8 8 8 13 12 10 10 8 8 8 8 8 8 8 8 8 10 12 7 8 7 7 10 12 8 8 8 8 8 8 8 15 8 6 8 8 7 7 7 6 8 8 9 10 12 10 10 8 8 8 8 8 9 9 10 19 19 14 11 11 8 8 6 6 6 8 9 9 9 10 10 11 8 8 8 8 8 6 6 6 8 8 8 12 10 8 8 8 8 8 8 8 6 6 6 6 8 6 10 10 12 10 9 9 9 8 8 8 8 8 8 8 6 7 8 6 10 10 13 10 10 10 10 10 8 8 8 8 8 9 14 9 9 13 13 10 12 9 9 9 10 11 10 12 15 11 11 11 8 10 8 6 8 8 8 8 8 8 8 8 8 9 8 8 6 6 6 6 10 8 10 10 19 11 8 8 8 8 8 8 10 8 8 8 11 8 8 6 6 8 8 8 8 8 6 6 8 8 8 6 6 6 6 8 8 6 6 3 0	Open. Hide. 6 6 8 8 10 10 9 9 9 11 11 6 6 6 7 7 7 8 8 8 6 6 6 6 8 8 8 8 8 9 9 9 8 12 13 13 15 10 10 10 8 10 9 15 15 17 12 12 15 24 19 22 28 28 40 47 37 43 43 53 53 50 57 50 53 53 41 27 22 14 10 10 19 19 8 7 6 8 8 8 8 8 9 9 15 16 20 16 17 24 26 29 36 53 53 53 57 57 57 57 57 57 57 57 57 57 57 57 50 50 36 36 33 33 50 31 31 21 21 8 8 8 8 8 10 19 30 34 41 39 44 44 35 35 35 35 35 35 42 50 50 50 50 53 50 53 57 57 47 42 42 36 36 36 48 42 48 48 54 42 42 41 41 42 42 50 57 54 47 50 50 50 50 48 47 47 47 47 47 47 57 47 57 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 54 57 57 57 57 57 54 54 57 57 57 57 57 57 57 59 59 59 57 57 57 57 57 57 57 52 52 52 52 52 57 52 57 57 59 52 52 57 57 52 52 52 50 50 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 57 57 59 59 68 68 68 57 57 57 57 57 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 59 57 57 57 68 68 68 68 68 57 57 57 57 57 57 59 59 52 52 52 57 57 57 57 57 57 57 57 57 44 44 33 23 18 21 27 38 34 38 32 35 38 43 57 57 57 57 54 54 52 57 43 43 43 57 44 59 52 52 52 57 57 52 57 52 52 52 57 52 52 57 57 68 68 57 57 57 54 54 54 50 57 50 50 43 43 42 37 32 32 24 24 33 40 37 32 32 37 37 39 47 47 47 57 47 44 41 37 37 39 42 39 37 37 39 47 47 41 37 35 35 37 39 39 32 28 37 28 28 23 36 28 36 36 42 42 39 39 39 47 59 43 48 48 57 57 32 32 20 20 15 28 21 32 33 39 43 43 34 32 18 18 14 14 14 28 28 30 30 23 22 22 27 30 30 34 28 28 25 34 28 28 20 20 15 26 15 17 17 21 18 26 17 17 17 24 18 15 14 14 13 29 26 28 18 18 20 24 24 37 28 28 44 44 36 17 15 15 27 23 41 48 44 57 46 46 44 43 37 43 35 44 39 41 32 32 30 36 36 43 30 21 21 21 15 19 24 25 30 32 32 37 31 32 13 13 10 10 10 17 10 13 12 21 21 25 29 36 34 34 33 28 22 22 22 22 30 32 32 32 25 25 30 22 22 18 18 16 16 25 32 28 26 21 19 19 19 29 24 24 24 28 30 27 24 28 20 24 15 12 10 15 11 11 10 17 10 10 10 22 26 30 22 22 11 11 12 20 20 15 14 10 10 10 21 16 16 15 15 11 13 10 9 9 9 9 13 21 27 16 15 8 8 8 8 11 13 16 16 13 11 11 13 11 10 21 21 18 17 15 12 8 8 8 11 9 11 12 12 16 14 14 14 12 12 16 17 15 10 10 10 12 15 29 32 39 40 39 37 26 22 12 11 11 15 11 10 10 23 21 21 11 11 11 11 20 22 10 9 9 9 12 10 12 15 9 9 9 9 9 9 9 11 15 11 14 10 10 10 14 10 10 9 8 8 8 11 12 10 20 24 19 19 15 13 8 9 10 8 8 8 8 8 10 25 22 25 11 11 11 11 11 11 24 28 18 18 28 22 22 11 11 11 11 11 11 11 9 8 8 11 11 17 10 9 9 10 8 9 8 8 7 8 9 22 16 12 12 10 8 15 15 11 11 13 17 12 13 10 9 9 9 10 12 13 12 10 8 8 8 8 8 8 9 10 13 16 10 10 9 9 10 12 10 10 11 15 11 11 11 11 9 11 11 10 10 8 8 7 6 8 8 8 6 6 6 6 8 10 9 10 9 9 8 8 8 8 8 8 11 11 8 8 10 8 7 6 8 8 7 7 8 8 8 10 9 9 10 12 11 11 11 15 26 11 8 8 10 10 8 8 9 9 8 8 12 12 8 8 10 10 10 13 10 9 9 6 8 8 8 6 6 10 8 6 6 8 8 8 8 10 10 10 9 9 9 9 10 8 6 6 8 8 19 12 10 9 9 13 10 6 6 8 8 9 8 8 6 7 11 12 13 10 8 8 8 8 8 8 8 8 7 7 8 8 8 8 8 8 8 10 15 11 11 11 11 10 13 11 12 11 12 11 11 15 17 10 10 9 9 9 9 9 10 12 12 8 8 7 7 10 10 13 13 12 8 10 8 8 8 8 10 8 8 8 9 9 9 19 21 22 10 10 10 11 8 8 8 8 8 8 8 10 7 8 8 8 8 9 9 8 8 6 6 8 8 9 10 13 16 12 12 10 10 9 6 8 8 10 10 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 9 8 7 8 8 8 8 10 9 7 10 8 9 10 13 15 13 11 8 10 8 10 8 6 6 10 11 7 6 10 8 6 6 8 8 25 14 10 9 6 7 8 8 11 11 13 10 10 6 6 6 6 8 10 10 15 12 14 19 18 14 8 10 8 8 8 10 18 15 13 8 8 8 8 8 8 6 6 10 8 8 8 8 8 8 10 9 7 8 8 8 10 9 12 10 10 9 8 10 10 10 15 15 8 8 6 6 10 8 10 10 8 8 8 6 7 13 8 10 8 10 8 8 12 13 18 18 10 10 10 6 6 8 8 10 12 14 11 10 9 9 9 8 10 7 7 10 8 8 10 11 8 9 6 8 8 10 8 12 8 9 7 6 6 6 8 6 9 8 8 8 8 8 8 10 12 13 8 8 6 6 8 8 16 13 16 18 11 11 8 9 9 9 10 8 8 8 8 8 15 15 19 16 16 13 13 13 23 17 10 9 9 10 18 13 10 10 10 11 11 14 12 11 8 8 8 10 15 10 8 8 6 7 10 6 6 6 6 8 8 8 8 7 6 6 6 9 13 10 6 6 8 10 11 8 8 10 10 8 6 6 6 6 6 8 16 10 13 8 8 7 6 8 10 16 20 11 11 8 6 6 6 6 10 10 13 9 9 12 10 10 9 9 12 10 6 7 8 7 8 8 9 10 8 7 6 10 11 13 13 12 10 9 9 10 13 6 6 8 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no106_e07.g1 MSMg01no106_e07.g1 CHROMAT_FILE:
MSMg01no106_e07.g1 PHD_FILE: MSMg01no106_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:27 2005
         (503 letters)



>mm_chr3_102365608_102366510
          Length = 903

 Score =  911 bits (471), Expect = 0.0
 Identities = 494/503 (98%), Gaps = 3/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaagagcccaccaagcacagggcacagggactcgggagcatttccctgagacatgggac 60
           |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 201 gtaagagcccaccaagaacagggcacagggacttgggagcatttccccgagacatgggac 260

                                                                       
Query: 61  tttatgtgccagagtacctcagaggtgggttaaacctaggattagaggagtttataaaag 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tttatgtgccagagtacctcagaggtgggtcaaacctaggattagaggagtttataaaag 320

                                                                       
Query: 121 cactgaaaagcagggactggcagaacgaagctgagaggacagattgaccacgatagatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgaaaagcagggactggcagaacgaagctgagaggacagattgaccacgatagatgc 380

                                                                       
Query: 181 tagatgagaagatgggaaatctttaggaacaggtgatggttcagtaggtgacagcctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagatgagaagatgggaaatctttaggaacaggtgatggttcagtaggtgacagcctttg 440

                                                                       
Query: 241 tgacacaagcaacataaaaagccaggcatcatcatgtgtggtcatgtgtgatcatgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacacaagcaacataaaaagccaggcatcatcatgtgtggtcatgtgtgatcatgtgtg 500

                                                                       
Query: 301 gtcatatatgcttgtaatcacagcactgttgattgaggggcagagaccttaagatcttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatatatgcttgtaatcacagcactgttgattgaggggcagagaccttaagatcttag 560

                                                                       
Query: 361 gaactggctggccattagctgaacaccgtgttcagtgggggggggggctgtctcaaagag 420
           |||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||
Sbjct: 561 gaactggctggccattagatgaacaccgtgttcag---gggggggggctgtctcaaagag 617

                                                                       
Query: 421 atatggaagagcatgctagagcaagacatcagatgtcatctgacttccatgcatagatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atatggaagagcatgctagagcaagacatcagatgtcatctgacttccatgcatagatgt 677

                                  
Query: 481 acatgcctgtacatgcacacaca 503
           ||||||||||||||||| |||||
Sbjct: 678 acatgcctgtacatgcatacaca 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information