Query= MSMg01no106_f19.b1 MSMg01no106_f19.b1 CHROMAT_FILE:
MSMg01no106_f19.b1 PHD_FILE: MSMg01no106_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:41 2005
(654 letters)
>mm_chr3_64701454_64702505
Length = 1052
Score = 942 bits (487), Expect = 0.0
Identities = 500/505 (99%), Gaps = 2/505 (0%)
Strand = Plus / Minus
Query: 1 tttgattacaatgcgccccctgccccagtctcctaaaagaattaattgcttttgagggcc 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 703 tttgattacaatgcgccccctgccccagtcttttaaaagaattaattgcttttgagggcc 644
Query: 61 acttgtcaaaagacacgtgcaacttttttttttttatagaaagtagaaataaaaataaac 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 643 acttgtcaaaagacacgtgcaac--ttttttttttatagaaagtagaaataaaaataaac 586
Query: 121 ctgtgccaataaaacacgtaacccaagcctgcaaccaagcccctgagcaggctgtcatag 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 585 ctgtgccaataaaacacgtaacccaagcctgcaaccgagcccctgagcaggctgtcatag 526
Query: 181 aagttcacacagcagcagctgcataatgcatgtgctctcagtgtttagattattgagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aagttcacacagcagcagctgcataatgcatgtgctctcagtgtttagattattgagaca 466
Query: 241 tccaggtaactttcctccaggtacagttagtatttaattcataaacagataatttaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tccaggtaactttcctccaggtacagttagtatttaattcataaacagataatttaaaga 406
Query: 301 ctgagtttattcatatttcatatttcacaaatgttacctgctaccatccttttaagtttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctgagtttattcatatttcatatttcacaaatgttacctgctaccatccttttaagtttc 346
Query: 361 atgttgggtctttcccaactttagctgctttggaaatgagactctgtactgtatcttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atgttgggtctttcccaactttagctgctttggaaatgagactctgtactgtatcttttt 286
Query: 421 ttcacatcacacagaatgttcagtaatttggtaagttttcatgatttttcatacactgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttcacatcacacagaatgttcagtaatttggtaagttttcatgatttttcatacactgtt 226
Query: 481 tacacaatttatcagaagggttttc 505
|||||||||||||||||||||||||
Sbjct: 225 tacacaatttatcagaagggttttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1052
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1042
Effective search space: 671048
Effective search space used: 671048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_f19.g1 MSMg01no106_f19.g1 CHROMAT_FILE:
MSMg01no106_f19.g1 PHD_FILE: MSMg01no106_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:41 2005
(562 letters)
>mm_chr3_64576769_64577732
Length = 964
Score = 1031 bits (533), Expect = 0.0
Identities = 555/563 (98%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 1 accacttctatatggggtagttgcttttgtgcttggattctgagggtccttataaatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accacttctatatggggtagttgcttttgtgcttggattctgagggtccttataaatcag 260
Query: 61 gaattccatggttgtgggcaaatcttttaaaaactcaaactcagtggcacactaccaaca 120
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattcgatggttgtggacaaatcttttaaaaactcaaactcagtggcacactaccaaca 320
Query: 121 aaatagacatagataccagtgggagagttgctttattgcctattaaggtgag--tttttt 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaatagacatagataccagtgggagagttgctttattgcctattaaggtgagtttttttt 380
Query: 179 tttctctcacggtgtttttaactaaggtttaagaatccatgactcaggcaagtggtgtta 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctctcaaggtgtttttaactaaggtttaagaatccatgactcaggcaagtggtgtta 440
Query: 239 tttgtatactgatacaaatacccatgctgtttaattgcatgtgaacactctcagtgtcct 298
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 441 tttgtatactgatacaaatacccatgctgtttaattgcatgtgaacacacacagtgtcct 500
Query: 299 ggttctgagatgtgactgtatgttcctcttttgtcactcgctgtttcatccttgcagatc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttctgagatgtgactgtatgttcctcttttgtcactcgctgtttcatccttgcagatc 560
Query: 359 tctaagggcactggcaatagtgaggctccccttaggaatagcaacagattctgtccagat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaagggcactggcaatagtgaggctccccttaggaatagcaacagattctgtccagat 620
Query: 419 gtatgttcttatatttgcttgtaaacaaacaaacaaaaaaacacctaaacccaccacacc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatgttcttatatttgcttgtaaacaaacaaacaaaaaaacacctaaacccaccacacc 680
Query: 479 ctcatcaacacagacaaagaggtaggaatttacagaaagctcatgccccaagtttactat 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 ctcatcaacacagacaaagaggtaggaatttagagaaagctcatgccccaagtttactat 740
Query: 539 agacagctctgttggtttttttg 561
|||||||||||||||||||||||
Sbjct: 741 agacagctctgttggtttttttg 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 964
Length adjustment: 10
Effective length of query: 552
Effective length of database: 954
Effective search space: 526608
Effective search space used: 526608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
