Query= MSMg01no106_j05.b1 MSMg01no106_j05.b1 CHROMAT_FILE:
MSMg01no106_j05.b1 PHD_FILE: MSMg01no106_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:13 2005
(580 letters)
>mm_chr3_128872595_128873573
Length = 979
Score = 1046 bits (541), Expect = 0.0
Identities = 571/581 (98%), Gaps = 3/581 (0%)
Strand = Plus / Plus
Query: 1 agagttggggttaaagaagtgtgtcactgcccctggaatttttatgttggatcaagttca 60
||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 201 agagtcggggttaaagaagtgtgtcactgcgcctggc-tttttatgttggatcaagttca 259
Query: 61 attcctcgggctcgcacagagagcaacacacaggctgtctcatccaccccttaaaatatg 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 attcctcgggctcgcacagagagcaacacacaggctgtctcatcaaccccttaaaatatg 319
Query: 121 ttctatcttctcttcccaccattatattttcattcttcaatgaaacacagaccctttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttctatcttctcttcccaccattatattttcattcttcaatgaaacacagaccctttaga 379
Query: 181 acattgacctggattagagaactacaagtagcactgagatggtaagcctcagtgttgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acattgacctggattagagaactacaagtagcactgagatggtaagcctcagtgttgaac 439
Query: 241 agttgtgttgaacagttttgctctcctggcttctgtcatcgcacaggcctctgccaaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agttgtgttgaacagttttgctctcctggcttctgtcatcgcacaggcctctgccaaact 499
Query: 301 gcaggtgtttaaagtagccttggtgtgg-aaatgcataaaaatcataagctttgcagttg 359
||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 500 gcaggtgtttaaagtagccttggggggggaaatgcataaaaatcataagctttgcagttg 559
Query: 360 gagtgtgaaaacttgcccaatctccgcacacttttacgtcaaagcactgtgagggtgtcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagtgtgaaaacttgcccaatctccgcacacttttacgtcaaagcactgtgagggtgtcc 619
Query: 420 gagaacagggtcacaagatttgcctttctcacaagcctttgtggacaaaccaaggagaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagaacagggtcacaagatttgcctttctcacaagcctttgtggacaaaccaaggagaaa 679
Query: 480 aaaaagagagagagaaaggagacaggaagtcgagcacagtgaagccctgcttagtgggaa 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaa-agagagagaaaggagacaggaagtcgagcacagtgaagccctgcttagtgggaa 738
Query: 540 agcctacactctgaagccgcctccgctatagccacgtggtc 580
||| |||||||||||||||||||||||||||||||||||||
Sbjct: 739 agcgtacactctgaagccgcctccgctatagccacgtggtc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_j05.g1 MSMg01no106_j05.g1 CHROMAT_FILE:
MSMg01no106_j05.g1 PHD_FILE: MSMg01no106_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:13 2005
(413 letters)
>mm_chr3_128984045_128984856
Length = 812
Score = 739 bits (382), Expect = 0.0
Identities = 403/410 (98%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 1 tctggttttcaattaattgtcttatttactttctctctcagagctcaacttctgaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tctggttttcaattaattgtcttatttactttctctctcagagctcaacttctgaattat 550
Query: 61 aaactcgctctgaacttgaccatgtatctcaaatcagaagaggatttcctaccatgggag 120
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaatagctctgaacttgaccatgtatctcaaatcagaagaggatttcctaccatgggag 490
Query: 121 agagtcatttcatctgtaagctacatcattagcatgtttgaagatgacagagagctgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agagtcatttcatctgtaagctacatcattagcatgtttgaagatgacagagagctgtac 430
Query: 181 cccatgatagaggtgacgttaatgttattagtataccacaaatgtaaatgtttagttgat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 429 cccatgatagaggtgacgttaatgttattagtataccacaaatgtaaatgtttagtcgat 370
Query: 241 tggggtggcttctaggggaaggacctcttggggaatctctatctatcacatgaagttaag 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 369 tggggtggcttctaggggaaggacctcttggggaatctctatctaccacatgaagttaag 310
Query: 301 agatgaggtcatgactggtcattgcagatgggttgtgtgatcttttgcactttaaaatat 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agatgaggtcatgactggtc-ctgcagatgggttgtgtgatcttttgcactttaaaatat 251
Query: 361 ttagtatttgtgtttctgcatgtctccaaaaggtatcaattttaatatca 410
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 250 ttagtatttgtgtttctgtatgtctccaaaaggtatcaattttaatatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 812
Length adjustment: 9
Effective length of query: 404
Effective length of database: 803
Effective search space: 324412
Effective search space used: 324412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
