Query= MSMg01no106_j16.b1 MSMg01no106_j16.b1 CHROMAT_FILE:
MSMg01no106_j16.b1 PHD_FILE: MSMg01no106_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:17 2005
(316 letters)
>mm_chr3_141755983_141756698
Length = 716
Score = 551 bits (285), Expect = e-161
Identities = 309/321 (96%), Gaps = 10/321 (3%)
Strand = Plus / Minus
Query: 1 agtgaggatcctggagacaccag----ggcctttaaatttttcattgaagtgaaaatgtt 56
||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 516 agtgaggatcccggagacaccaggggaggc----agatttttcattgaagtgaaaatgtt 461
Query: 57 ttatctttgaaatcctagccatattaccctttcaccatcgatac-cgaattaagtaattt 115
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 460 ttatctttgaaatcctagccatattaccctttcaccatcgatacac-aattaagtaattt 402
Query: 116 gctcacaatcatgccaaattagagaatattttatttatgaccttcccggatgtctcaggc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gctcacaatcatgccaaattagagaatattttatttatgaccttcccggatgtctcaggc 342
Query: 176 ttacacttagttatgactatgtgtgaactcctttaaaggaccactttgtcagtgtgccct 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttacacttagttatgactatgtgtgaactcctttaaaggaccactttgtcagtgtgccct 282
Query: 236 cttgctttaagaaatacccatcatctttgtgccacctggtctgagatctggcttctgagc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cttgctttaagaaatacccatcatctttgtgccacctggtctgagatctggcttctgagc 222
Query: 296 cgccacagcacactgatcaaa 316
|||||||||||||||||||||
Sbjct: 221 cgccacagcacactgatcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_j16.g1 MSMg01no106_j16.g1 CHROMAT_FILE:
MSMg01no106_j16.g1 PHD_FILE: MSMg01no106_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:17 2005
(474 letters)
>mm_chr3_141612519_141613391
Length = 873
Score = 781 bits (404), Expect = 0.0
Identities = 452/474 (95%), Gaps = 13/474 (2%)
Strand = Plus / Plus
Query: 1 tttttccatttccaatgtttcatgacccctactttcagttacatgaccatttatgtgtcc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 201 tttttccatttccaatgtttcatgacccctactttcagttgcatgaccatttacgtgtcc 260
Query: 61 aagacccagttttaaaaacctgggtctgtaacacagtcttccttgcaactgaaaatgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aagacccagttttaaaaacctgggtctgtaacacagtcttccttgcaaccgaaaatgtag 320
Query: 121 gatgctttatagtacatccttctcagtcacttaaactaacagaagtttcaagacatatac 180
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gatgttttatagtacatccttctcagtcacttaaagtaacagaagtttcaagacatatac 380
Query: 181 tattttaacatcacttgaatgaagttttcatttaaaaattaattacaatagttttttccc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tattttaacatcacttgaatgaagttttcatttaaaaattaattacaatagttttt-ccc 439
Query: 241 tatcagaaatatcagaaaatatattaatggaatgaactcttattacatgagtttttt--a 298
||||||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct: 440 tatcagaaa---------atatattaatggaatgaactcttagtacatgagtttttttta 490
Query: 299 aatgccatagaaatataaacaattttcccttcatgcaatttaacattaaaattatagact 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatgtcatagaaatataaacaattttcccttcatgcaatttaacattaaaattatagact 550
Query: 359 ggccaaataatgttaacttttttttt-ctccccctcatcccctaatgtgaacttctaaaa 417
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 551 ggccaaataatgttaacttttttttttctcccccgcatcccctaatgtgaacttctaaaa 610
Query: 418 gaagtaacgtacagggctgaagagatgctcaaacattgagcagatactaccctt 471
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 611 gaagtaacgtacagggctggagagatgctcaaacattgagcagatactaccctt 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
