Query= MSMg01no106_k22.b1 MSMg01no106_k22.b1 CHROMAT_FILE:
MSMg01no106_k22.b1 PHD_FILE: MSMg01no106_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:28 2005
(728 letters)
>mm_chr3_158481751_158482878
Length = 1128
Score = 1178 bits (609), Expect = 0.0
Identities = 687/717 (95%), Gaps = 12/717 (1%)
Strand = Plus / Plus
Query: 14 gaattccacaaagctgtctcttacgtgagtgatcagtgctggtatcaccgttatcacatc 73
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 214 gaattccacaaagctatctcttatgtgagtgatcagtgctggtatcactgttatcacatc 273
Query: 74 aggcactgactaaagaaaaatcaagatggcaggctctatagctttaaaacatacatctgt 133
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aggcaatgactaaagaaaaattaagatggcaggctctatagctttaaaacatacatctgt 333
Query: 134 gcttcttcagtgatctgactggatgctgtagactctggacaggcaaatgaatgctttgct 193
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcttcttcagtgatctgactagatgctgtagactctggacaggcaaatgaatgctttgct 393
Query: 194 ctgcttatgttctattttgtgtgtcttaaaaaacttggtaaaagccgggcagtggtagca 253
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 394 ctgcttattttctattttgtgtgtcttaagaaacttggtaaaagccgggcggtggtggca 453
Query: 254 cacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttagaggcca 313
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 catgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttagaggcca 513
Query: 314 gcctggtctacaaagtgagttccaggacagccagagctacacagagaaaccctatctcaa 373
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtctggtctacaaagtgagttccaggacagccagagctacacagagaaaccctatctcaa 573
Query: 374 aaaaacaaaaaaacaacaacaaacaaacaaacaaacaaacaacaaacaaaacaaacaaac 433
|||| ||||||||||| || |||||||||||||||||| || ||||||||||||||||
Sbjct: 574 aaaaccaaaaaaacaa-aa--aacaaacaaacaaacaaa-aa--aacaaaacaaacaaac 627
Query: 434 aaacaaaaaccccaaagaaacttggtaaaatactg--ttacaatgctcataaatttagtc 491
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 628 aaacaaaaaccccaaagaaacttggtaaaatactgagttacaatgttcataaatttagtc 687
Query: 492 actgacaatattctagcaatgggtattttatattaccagtagtatataatcatggttata 551
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 688 actgacaatattctagcaatgggtattttatattgccaggagtatataatcatggttata 747
Query: 552 tgagtatatggtgacagagaacatgaagacaggggcaaatatgtaatgttatgtattttc 611
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 748 tgagtatatggtgacagagaacatgaagacagggtcaaatatgtaattttatgtattttc 807
Query: 612 tgcagctggacatgtagctcagtcatcaaatgtttgcctcagaacacacaaagccctggc 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgcagctggacatgtagctcagtcatcaaatgtttgcctcagaacacacaaagccctgg- 866
Query: 672 tggattggctctccagtactacacagatcacatgaaaacttattttctgaaaatcca 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ---attggctctccagtactacacagatcacatgaaaacttattttctgaaaatcca 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1128
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1118
Effective search space: 802724
Effective search space used: 802724
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no106_k22.g1 MSMg01no106_k22.g1 CHROMAT_FILE:
MSMg01no106_k22.g1 PHD_FILE: MSMg01no106_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:28 2005
(701 letters)
>mm_chr3_158504635_158505735
Length = 1101
Score = 1301 bits (673), Expect = 0.0
Identities = 694/701 (99%), Gaps = 1/701 (0%)
Strand = Plus / Minus
Query: 1 aaaataaaatgttatctttctcttgctttttactaatgccatttagaaattctcactcac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1060 aaaataaaatgttatctttctcttgcttttta-taatgccatttagaaattctcactcac 1002
Query: 61 aattcttgctagatttctccattgttttgggtttggtgctcctggattcacaaatgaccg 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1001 aattcttactagatttctccattgttttgggtttggtgctcctggattcacaaatgactg 942
Query: 121 ttcgcttgaataactctttgaaattttaagtttatcatttttgtagagtgaccttatata 180
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 941 ttcgcttgaataactcattgaaattttaagtttatcatttttgtagagtgatcttatata 882
Query: 181 atttcaaaggaaacggttctatgtttagttatatccttcattttcctctgagaattcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 atttcaaaggaaacggttctatgtttagttatatccttcattttcctctgagaattcagt 822
Query: 241 ccatttaaagaacaaaagctgtgacccactcaaatcaaaagtaagacaccttgtcccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ccatttaaagaacaaaagctgtgacccactcaaatcaaaagtaagacaccttgtcccttt 762
Query: 301 ggtataaatatacaaagtgggcacagagctgcagagcaatatgcatttatcttacttgtg 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 761 ggtataaatatacaaagtgggcacagaactgcagagcaatatgcatttatcttacttgta 702
Query: 361 taagattaaagatcacaactaaacaatagacctcattgtatgtagttatttgtcaaaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 taagattaaagatcacaactaaacaatagacctcattgtatgtagttatttgtcaaaggt 642
Query: 421 atgccaacacattccattgtggcccatttattattctaagttcagttataaaaactataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atgccaacacattccattgtggcccatttattattctaagttcagttataaaaactataa 582
Query: 481 ataaattgtagctatgaatgaaattctttttaaaaagtataatttgtgtgtatacaactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ataaattgtagctatgaatgaaattctttttaaaaagtataatttgtgtgtatacaactt 522
Query: 541 gtatttattcaagcagtttcacaaatgtctaatgagtgaatgtcttatataatttaaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gtatttattcaagcagtttcacaaatgtctaatgagtgaatgtcttatataatttaaaaa 462
Query: 601 atgcaagcttactgagagcaatacagtccttccaacatacaatacaaaaaaccttggcaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atgcaagcttactgagagcaatacagtccttccaacatacaatacaaaaaaccttggcaa 402
Query: 661 agctaagttcctcccaaaacaattaatgaacatggcaaatg 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agctaagttcctcccaaaacaattaatgaacatggcaaatg 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
