Query= MSMg01no106_n13.b1 MSMg01no106_n13.b1 CHROMAT_FILE:
MSMg01no106_n13.b1 PHD_FILE: MSMg01no106_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:51 2005
(630 letters)
>mm_chr3_70906292_70907322
Length = 1031
Score = 1081 bits (559), Expect = 0.0
Identities = 620/651 (95%), Gaps = 24/651 (3%)
Strand = Plus / Plus
Query: 1 gctatggtaactctttttccagcattgatttctatttttttctggaataaaccctgctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gctatggtaactctttttccagcattgatttctatttttttctggaataaaccctgctta 241
Query: 61 aaaatgattttgtagccgggcccggtggtgcatgcctttaatcccagcactggggaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaaatgattttgtagccgggcccggtggtgcatgcctttaatcccagcactggggaggca 301
Query: 121 gaggcaggcagatttctgagtttgaggccagcctggtctacagagtgagttccaggacag 180
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 302 gaggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacag 361
Query: 181 ccagggctacacagagaaaccctgtctcgaaaaacaaaaaacaaaaaaa----------c 230
||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 362 ccagggctacacagagaaaccctgtctcgaaaaacaaaaaaaaaaaaaaaaaaacaaaac 421
Query: 231 aaaaaa-----caaacaa-caacaa----caacaacaacaaaagattttgtgtttcaaag 280
|||||| ||||||| ||| || ||||||||| |||||||||||||||||||||
Sbjct: 422 aaaaaaaaaaacaaacaagcaaaaaaaaccaacaacaa-aaaagattttgtgtttcaaag 480
Query: 281 attttatatgggaaattaacatttgaaaactgtatttttctaatactttattaattgatt 340
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatatatatgggaaattaacatttgaaaactgtatttttctaatactttattaattgatt 540
Query: 341 aaatttggctacatatacaattctgcattcagagttattattttt-ctttcaccccaaat 399
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 541 aaatttggctacatatacaattctgcattcagagttattattttttctttcaccccaaat 600
Query: 400 cattaaccaaatttagctgtcattattttgagctttaaatgaaattttactttcttgtaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cattaaccaaatttagctgtcattattttgagctttaaatgaaattttactttcttgtaa 660
Query: 460 catctttacatagaaaccatgcccttgtttatttgatttttccaattatcaagctctaag 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 catctttacatagaaaccatgcccttgtttatttgatttttccaattatcaagctctaag 720
Query: 520 tgttgga-ggtggtcattatcttcaggttgctttaaacccaagttagtaatactgtaaat 578
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgttggaagg-ggtcattatgttcaggttgctttaaacccaagttagtaatactgtaaat 779
Query: 579 gatcattatatgttcataattagccaccctttgcttattttgcctctaata 629
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gatcattatatgttcataattagccaccctttgcttattttgcctctaata 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_n13.g1 MSMg01no106_n13.g1 CHROMAT_FILE:
MSMg01no106_n13.g1 PHD_FILE: MSMg01no106_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:51 2005
(341 letters)
>mm_chr3_71034817_71035557
Length = 741
Score = 580 bits (300), Expect = e-170
Identities = 318/324 (98%)
Strand = Plus / Minus
Query: 1 atttgccttaatttagtaatgagaatagaattcccccaaatatttttgatatggtgatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 atttgccttaatttagtaatgagaatagaattcccccaaatatttttgatatgatgatgc 265
Query: 61 ttatctacttttacatgaagaatacttggaaataaaatacacatgcataatagaagacat 120
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 ttatctaattttacatgaagaatacttgaaaataaaatacacatgcataatagaagacat 205
Query: 121 attaaaactctcagttgagaagagggacatagaaggtttctgtaagaatacctacaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 attaaaactctcagttgagaagagggacatagaaggtttctgtaagaatacctacaccca 145
Query: 181 cctcactccaccacataaaataagtaagagcctgctcagacagccatcaaaaagagctct 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 144 cctcactccaccacataaaataagtaagagcctactcagacagccatcaaaaagagctct 85
Query: 241 taaaatcatgataaggatcataaagtgtagctctctacaattggtgtttctggggtgggc 300
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 84 taaaatcatgataaggatcataaagtgtagctctctacaattgatggttctggggtgggc 25
Query: 301 agtgtagcaggtgggaaaagacta 324
||||||||||||||||||||||||
Sbjct: 24 agtgtagcaggtgggaaaagacta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
