BAC Information

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BAC

Clone NameMSMg01-106O05
Chromosome3 (Build37)
Map Location 75,926,693 - 75,927,086
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106O05.T7 (MSMg01no106_o05.b1)MSMg01-106O05.TJ (MSMg01no106_o05.g1)
ACCAG320851AG320852
length7311,942
length of high quality
(start - end)
120 (129 - 248)527 (130 - 656)
definitionCHROMAT_FILE: MSMg01no106_o05.b1 PHD_FILE: MSMg01no106_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:57 2005CHROMAT_FILE: MSMg01no106_o05.g1 PHD_FILE: MSMg01no106_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATGTTGGCTCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGG
ATCCGCGGAATTAACCTTACTCTCAAAAAATAATTAATGCCAATACTTCT
TATGCTCTCCCACATAACAGAAACTGAAGGAACTTTCCCCAATTCTTTTT
ATGAGGCCACAGATAAACTCATCTCCAAACTCTGCCAATAACCAATGGAG
AAAAAGAAATACAGACCAATTTCTCTAATAAATATAGATTGAATATTCCC
ACGAAAACACTGGCAAACTGAATCTAATAACATACCAAAAAGATCACCCT
CAATACTAAAGTAGGTTTTCACCCTATATATGCATGGATGGCTCAAAATA
CGCAAATTCATATGTGTGATTTACCACATAAAGACCGATTCGGCAAGGCG
AATATCCTTTCGCCATGTCCTCACCCAATATCCCTTATCTTGATCTTCAT
CCATTACCTGACATACCTATCACACCTTTACCTTCTTCCATCTTCTACCA
CACGTTTTATTAAACATCCATTATCCCTTTTAGCTCTACTCTCCCACAGC
CCATTATCTATTCTACTCCTCTCTCTCTACTCTCTATCACCTATTTCTCT
CTATTATCTCCGTTTGCATCTATATTCTCCCCCCCTTCTTCTTTTCATCC
CTTCGCATTCTTTTCTCCCCTCTTTCTGTTATTAATTACGCTTTCTTCTC
TATGTCATTCCTCTTCATTTTTTTCTTCTTG
NAATAGAACTATTTCTNNTNNGGGAGTATCGTNGGNCNCGTGNCNXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTACTTAACAAAGC
CCTAGNTTTCACCAACCCAATTAGAATAAAATTACCATCAGACAGCACTT
AATGCCTATAGCTGAAATTTGCCCACCTATATAATGTTTCCTCCAATATT
TTGAAACATGCCTTGATTTATGACTTTCTTTGTTTCTAAAAAAAAAAATG
GGGAGGGGATAGGGTGTTTTCGGAGGGGAAACCAGGAAAGGGGATAACAT
TTGAAATGTAAATATAGAAAATATCTAATAAAAAATTCTTTACCAAACTG
TTATCACATGAAATTTGAAATAATCTAAACTTGTGTTCATAGACTTTGGC
TGTGTTTGCCTTCAGAATAAACTAATCTCTTCTCATCTTTAAGGTCTGAG
TTGTGATTCTTGGCAACACAGGGTTGTCTCTATAGGCATAGCATCAGAAT
ATGTTCTGTACCTTTAACATGTGAGACCCATTGAAAGCCCACGGAGGGTA
CCCTCAAAGGGAACTGGGGAGCCAAGGCTCTTTCACTGTCTCTCCCTGTG
TTGACATGTGATGTCAACTTACACTCCATCACTATTGTGCTGCTCCATCA
ACAGACTAACAACTGAGAGGAACACAAGCTTTCATTTCTATTAAGTCAGC
TGCAACAGGTGTACTGTAATCCGCCAAAGCAGACTTATAATGTTTCCAGC
AATGTATTTGCTCAATGATTTGATTTATGAATTTGCCTGTTGCTAGAAAA
TTTATCCAATTTTTAACATTTAATAATGCAGATTTTGTAGTACCTTAAAT
CTGTGTCCTCCAGCCAGGGTAATTTCAAATTTGCCTTCAAAATAAATTGC
TACCCCTCTGTATGTAATACTTAGAACTCCTTACTTTATCGAATGTTGGC
CCTGCATTTTGGAGCTCCTTCCTAATTCGGGTTTTCTGATTTCTTACTAA
ATTGGTTTTAAAATTTAAAATTTTTTTTTTAATATATTCCTTCTTTACAT
TTCAATGTCATTACTTTACTGTTTCCTTCCAAAATCCTCTAATACTCTAA
TTCCCCTTTTTTCATATTTATGCATTATTTTTTTCCTCTGTTTTCTATTC
TCCATACTAATTTCCTATATTACAAGCTTTCTTTTATTATTTTTTCCCTT
CTTTTTGGCATTAATTCTTTATCTATTACCTTTTCTTTTCTTTTCTACAT
TTTCATTTCCACTCGCTCTTTCCATTCTTAATTCTTATTCACCTTCTCTT
TTTCTATTTTTTTTTATTTCAATTCTCCTCTATTTTCTCATTTTTCACTA
ATTCTTTTCTTCCTTTATATTTTCATTCTTATCATTTTTTCTCATACTTC
ATCATCTCTTGTTTTATTTTCATTCTATTCTCTTCACTTCATCTCTATTT
TTGCTTTTGTTCACTCATATCTATTTCATACTCCTCTTCTTTCAATATAT
TATTCTTTCCATTACTTTATCCTATTTCTACTCTTCTATTCCCATTCTAC
TATCTCCTCTTCACACTCATATCTTTTTCTATTGCTTTCTATAGGTCACT
ATAGATTTCTCATCTTACCACTTTTATTCTTCACTCTCTATATTTCTACT
TCTCTCTTCTTCTCATCTCTATATTACCTATCTCTTCTCTCTATCTTCAT
TTCTACTCTATCTTATTCTATCTACAATGTCTTTTATCCCCCTTCTTCTT
CTCCTCATCTTTTGTACTTCTATTCACTCTCTCCTCACTTTAATTATCAT
TTCCTAATACTNCTTACTATCTTTCTATTCTTCTTTATATTCTACTCTCA
ACCTATTANATTTCCTTTTCTACTCTATCTTATTCTCTATCTTTCTATCA
TTCATCTTCTTATTAATCTGCTTACCTCTCATAATATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_o05.g1 MSMg01no106_o05.g1 CHROMAT_FILE:
MSMg01no106_o05.g1 PHD_FILE: MSMg01no106_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:57 2005
         (527 letters)



>mm_chr3_75926160_75927086
          Length = 927

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 134 ggtgttttcggaggggaaaccaggaaaggggataacatttgaaatgtaaatatagaaaat 193
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ggtgtttttggaggggaaaccaggaaaggggataacatttgaaatgtaaatatagaaaat 868

                                                                       
Query: 194 atctaataaaaaattctttaccaaactgttatcacatgaaatttgaaataatctaaactt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 atctaataaaaaattctttaccaaactgttatcacatgaaatttgaaataatctaaactt 808

                                                                       
Query: 254 gtgttcatagactttggctgtgtttgccttcagaataaactaatctcttctcatctttaa 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gtgttcatagactttggctgtgtttgccttcagaataaactaatctcttctcatctttaa 748

                                                                       
Query: 314 ggtctgagttgtgattcttggcaacacagggttgtctctataggcatagcatcagaatat 373
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggtctgagttgtgattcctggcaacacagggttgtctctataggcatagcatcagaatat 688

                                                                       
Query: 374 gttctgtacctttaacatgtgagacccattgaaagcccacggagggtaccctcaaaggga 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gttctgtacctttaacatgtgagacccattgaaagcccacggagggtaccctcaaaggga 628

                                                                       
Query: 434 actggggagccaaggctctttcactgtctctccctgtgttgacatgtgatgtcaacttac 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 actggggagccaaggctctttcactgtctctccctgtgttgacatgtgatgtcaacttac 568

                                             
Query: 494 actccatcactattgtgctgctccatcaacagac 527
           ||||||||||||||||||||||||||||||||||
Sbjct: 567 actccatcactattgtgctgctccatcaacagac 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)