Query= MSMg01no106_o07.b1 MSMg01no106_o07.b1 CHROMAT_FILE:
MSMg01no106_o07.b1 PHD_FILE: MSMg01no106_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:58 2005
(226 letters)
>mm_chr3_80359266_80359891
Length = 626
Score = 385 bits (199), Expect = e-111
Identities = 217/223 (97%), Gaps = 2/223 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaatattttcg-aattatctgagctaacataaagtatcgaatgcctaagtcag 63
|||||||||||||||| | || |||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcaaaatatttt-gtaactatctgagctaacataaagtatcggatgcctaagtcag 263
Query: 64 agtcagtgtaatccatttttctaacagggatgaagtagaattaataatgcaaatatcagc 123
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 agtcagtggaatccatttttctaacagagatgaagtagaattaataatgcaaatatcagc 323
Query: 124 atttatagggggacaagaaaagttgttagacttctgatgtcattgacatcatttcgcatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttatagggggacaagaaaagttgttagacttctgatgtcattgacatcatttcgcatg 383
Query: 184 tcctctgtcctcaccggaagctgattgtgtatgaagctgaatc 226
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctctgtcctcaccggaagctgattgtgtatgaagctgaatc 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space: 133889
Effective search space used: 133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no106_o07.g1 MSMg01no106_o07.g1 CHROMAT_FILE:
MSMg01no106_o07.g1 PHD_FILE: MSMg01no106_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:58 2005
(476 letters)
>mm_chr3_80512292_80513167
Length = 876
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%)
Strand = Plus / Minus
Query: 1 catcaccaccctcccatttgatattgtggtctagtagtgcttccttcatagccaatccat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 catcaccaccctcccatttgatattgtggtctagtagtgcttccttcataaccaatccat 617
Query: 61 cttccttcataacaaagatagaccccttaaaggcccaggtgtttgtcttcatacccttca 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 616 cttccttcataacaaagatagaccccttaaaggcacaggtgtttgtcttcatacccttca 557
Query: 121 tttgaacattgtggtgactatattcctggttctatatacctgaatggtgaaagaggaagg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttgaactttgtggtgactatattcctggttctatatacctgaatggtgaaagaggaagg 497
Query: 181 caaagctcacctgagtgtggaacatctaggatgtggattgaagaagggaaaagtatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 caaagctcacctgagtgtggaacatctaggatgtggattgaagaagggaaaagtatgaat 437
Query: 241 catgaggacaggatgcttaccaatggagggagagaaggtggaattcattacaagacatga 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catgaggacaggatgcttagcaatggagggagagaaggtggaattcattacaagacatga 377
Query: 301 ttttgagataaaacaattgtgtacttagcagtgaggttataagtctgtgagttcattatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttttgagataaaacaattgtgtacttagcagtgaggttataagtctgtgagttcattatt 317
Query: 361 tgacaacacaagacaaaattatagatgcactcatgagagatgtagttaaaacactatcag 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgacaacataagacaaaattatagatgcactcatgagagatgtagttaaaacactatcag 257
Query: 421 tacgtgatagtctcataatgaccatgagttagactcgaatcttgctgttgatcaga 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tacatgatagtctcataatgaccatgagttagactcgaatcttgctgttgatcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
