Query= MSMg01no107_a13.b1 MSMg01no107_a13.b1 CHROMAT_FILE:
MSMg01no107_a13.b1 PHD_FILE: MSMg01no107_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:19 2005
(337 letters)
>mm_chr3_43018447_43019191
Length = 745
Score = 615 bits (318), Expect = e-180
Identities = 333/342 (97%), Gaps = 8/342 (2%)
Strand = Plus / Plus
Query: 1 atgttaaattatggcctcttgtgatcagcaaacttgtttaatttgtaattgtcaaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttaaattatggcctcttgtgatcagcaaacttgtttaatttgtaattgtcaaatttg 260
Query: 61 atgtaatttcctttttaatgccagttaaactccctttggggatggtgaatataccctact 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaattttctttttaatgccagttaaactccctttggggatggtgaatataccctact 320
Query: 121 ttagcaattttttgtgtgattatttactgtagtaaagtagtttagagtagatttgatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcaattttttgtgtgattatttactgtagtaaagtagtttagagtagatttgatatt 380
Query: 181 gattgcaccaaaaaaaaaa----tgaagcatggtaact----gtgttggaataaccaata 232
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 381 gattgcaccaaaaaaaaaaaaaatgaagcatggtaactaattgtgttggaataaccaata 440
Query: 233 aacataaaatgacacctttagaaacaattaacacattttcaagtcatctaacaaattttt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacataaaatgacacctttagaaacaattaacacattttcaagtcatctaacaaattttt 500
Query: 293 atctattttgaaacagacaagtgtatgtttaaatttaaatca 334
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctattttgaaacagacaagtgtatgtttaaatttaaatca 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 745
Length adjustment: 9
Effective length of query: 328
Effective length of database: 736
Effective search space: 241408
Effective search space used: 241408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_a13.g1 MSMg01no107_a13.g1 CHROMAT_FILE:
MSMg01no107_a13.g1 PHD_FILE: MSMg01no107_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:19 2005
(333 letters)
>mm_chr3_43191321_43192053
Length = 733
Score = 590 bits (305), Expect = e-173
Identities = 326/337 (96%), Gaps = 8/337 (2%)
Strand = Plus / Minus
Query: 1 agatagatagatagatagatagatagatatatagatagatagatagatagatagatagag 60
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 592 agatatatagatagatagatagatagatagatagatagatagatagatagatagatagag 533
Query: 61 gaggcaaaaaagacagtgcttcatacagaagtctgaattgtcaagataagatcaactgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gaggcaaaaaagacagtgcttcatacagaagtctgaattgtcaagataagatcaactgtg 473
Query: 121 cactcctaattgccacatttaggaagtagaggcaggtgcttcagggtcattagaggcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cactcctaattgccacatttaggaagtagaggcaggtgcttcagggtcattagaggcatt 413
Query: 181 agaagctaaaggcaagcaagtaacatgctattgatctcctactatgtgtgagacctatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agaagctaaaggcaagcaagtaacatgctattgatctcctactatgtgtgagacctatgc 353
Query: 241 tatgtattttagattttaataagccatttatgcca----acacttttcttctcaaggcta 296
||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 352 tatgtattttagattttaataagccatttatgccaacacacac----cttctcaaggcta 297
Query: 297 gacatcagcaaagattgacactagatcataacacacc 333
|||||||||||| ||||||||||||||||||||||||
Sbjct: 296 gacatcagcaaaaattgacactagatcataacacacc 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
