Query= MSMg01no107_j04.b1 MSMg01no107_j04.b1 CHROMAT_FILE:
MSMg01no107_j04.b1 PHD_FILE: MSMg01no107_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:38 2005
(326 letters)
>mm_chr3_11900009_11900734
Length = 726
Score = 511 bits (264), Expect = e-149
Identities = 311/332 (93%), Gaps = 12/332 (3%)
Strand = Plus / Plus
Query: 1 tggatctatttttctcactatacctacatgtatacaaattaatttattattttacatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatctatttttctcactatacctacatgtatacaaattaatttattattttacatctt 260
Query: 61 tcctgattttcttatcttctgtcttctagtagtaccattatttaatctatcacccactct 120
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tcctgattttcttgtcttctgtcttctagtagtaccattatttaatccatcacccactct 320
Query: 121 attttttt-ctttttttattagatattttctttacttacatatcaaatgttatccccttt 179
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 attttttttctttttttattagatattttctttacttacatatcaaatgttatccc-ttt 379
Query: 180 gttgtttacctctctgaaaacccactatccctacctcctacccctgattaccgtgtcatt 239
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 gctggttacctctctgaaaacccactatccctacctcctacccctgattaccgtgccatt 439
Query: 240 cccttacactggagcatacagccttaataggaccttttt-----cctctcttcttattga 294
|||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 440 cccttacactggagcatagagccttaacaggacc-----aagggcctctcttcttattga 494
Query: 295 tgaccagtgaggccatcctctgctacatatgc 326
|||||||||| |||||||| ||||||||||||
Sbjct: 495 tgaccagtgatgccatcctttgctacatatgc 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_j04.g1 MSMg01no107_j04.g1 CHROMAT_FILE:
MSMg01no107_j04.g1 PHD_FILE: MSMg01no107_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:39 2005
(507 letters)
>mm_chr3_11990881_11991787
Length = 907
Score = 717 bits (371), Expect = 0.0
Identities = 389/395 (98%)
Strand = Plus / Minus
Query: 1 aaaggagttggagtggactgtaagagaggtggaaaggataggaaaggatataagtatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaaggagttggagtggactgtaagagaggtggaaaggataggaaaggatataagtatgat 336
Query: 61 actcatttatgaaattatcaaaaaaagaatgataggagattttagcctgaactcttttat 120
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 335 actcatttatgaaattatcaaaaaaagaatgatagtagattttagcctaaactcttttat 276
Query: 121 gtagtgacaatacaatcatggatggcataatgtttcattaccataattcattcatctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtagtgacaatacaatcatggatggcataatgtttcattaccataattcattcatctgtg 216
Query: 181 ctttcttcatgtctgccttcctcctctcccctcccctcccttccaaccccctctcttttc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctttcttcatgtctgtcttcctcctctcccctcccctcccttccaaccccctctcttttc 156
Query: 241 ctcacactcttacttccatttccctactttccttttgatctttctctattggcaagccac 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 155 ctcacactcttacttccatttccctactttccttttgatctttctatattggcaagccac 96
Query: 301 atcacatgtgtggaggttagaggtcagcttgcatgagcaagttagttctcctcttgctcc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 agcacatgtgtggaggttagaggtcagcttgcatgagcaagttagttctcctcttgctcc 36
Query: 361 atatgagcctttgggattccaaatcatcatctggt 395
|| ||||||||||||||||||||||||||||||||
Sbjct: 35 atgtgagcctttgggattccaaatcatcatctggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
