BAC Information

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BAC

Clone NameMSMg01-107J17
Chromosome3 (Build37)
Map Location 43,550,519 - 43,551,134
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107J17.T7 (MSMg01no107_j17.b1)MSMg01-107J17.TJ (MSMg01no107_j17.g1)
ACCAG321322AG321323
length1,2751,296
length of high quality
(start - end)
549 (93 - 641)616 (89 - 704)
definitionCHROMAT_FILE: MSMg01no107_j17.b1 PHD_FILE: MSMg01no107_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:43 2005CHROMAT_FILE: MSMg01no107_j17.g1 PHD_FILE: MSMg01no107_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGATTTTATNNNNAAGCATTGCGCGCTATAGACTCCTATAGGGAG
AGGATCCGCGGAATTCCTTTGTGATTATGTTACCCATTTTCAGGATGATG
CCCTGCAGGTCCATCCATTTGCCCCCTAAATTTCATAAATTCATTCTTTT
TCCTAGCTGAGTGTTACTCCATTGTGTAAATGTACCACATTTTCTGTTCC
TCTGTTGAGGGACACCTGGATTCTTTCCAGCTTCTGGCTATTATAAATAA
GGCTGCTGTGAACATAGTGGAGCATCTGTCTTTCTTACAAGTTGGAACAT
CTTCTGAATAGATGCCCAGGAGAGGTATCATGGGATTCTCTGGTAGTACT
ATGTCTAATTTTCTGAGGACCCACCAGAATGATTTCCAGAGTGGTTGTAC
AAGCTTGCAATTCCTCCTAAATGGAGGAGTGTTCCTCTTTCTCCACATCC
TCACCATCATATTCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTG
GTGTGAGGTGGAATCTCAGGGTTCTTTTGATTTGCATTTCCCTGATGATT
ATCTTGGCATGACTCTAAGTAAGAAAGTGAAATATCTGTATGATAAGAAC
TTCAAGTCTCTGAATAAAGAAATTAAAGAAGGTCTCAGAAGATTGAACGA
TCTCCAATGCTCATGGATTGGCAGGATCAATATAGTATAAATGGCTATCT
TGCCAAAAGCAAATCTACAGATTCAATATAATCCTCATCAAAATTCCAAA
TTAATTCTTCACCAAATTATATATAGCAATCTGTAATTTCATCTGTGAAC
AACTAAAACCTTAGAAAATAAAAATTCTTCTTTAGTGATATATAAACTCT
CGGGTGTAATCCACCTGTCTGACCTAAATCTTTTACTAAATGTCAATTTG
TAATAAATTTGCTTGGTATTGTTTTTATAACCTTATTTTTATAACTATGT
TATATAATTTGAATATCCTAATTTAACCCTTCTCCCTTTTGTTTATTGTA
TCTTTGACTATGCTAATTTAAACCCTTTATTTGAAAAAAAATAATTGAAT
TTTCTTACTAATTCCTTTTTTCACATTTGGTTGTTTTTTCTATTTTTATA
ATGTATTTTTTANCCTTTCTTTTTCTCCTTTTATTAATTGCTAATCCTAT
TTGTCTCTATCTTTTCTCCCTTTTAATACTCAATCTTTCGTGCTAATTTT
CCTTTCATCTAATCCTGATAAAACTCTACTTTTTATATTGTCCCATCATC
TTAATATTTTCTTATATTATCTTCC
NCCGATTTTTTNNNNNTAACATGTGAGGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTATTTCAAACCACTTTCT
CTAAATAGAGTGATAGCAGTCCCTGAAAGTTCTCTTTCACTCATTCCTCA
AATTCCAATTTGAATATCCATGCTCTTGAGAACTAACAAAGCATCCTCAC
ACAGGACTGCTGGGATGAGAAGGTCATGCAGGCCAATAGTCAGCATATTG
TGAGGCATATCCTACAACATACTTTCTAGGGTCGTTCATATTCTCATATG
GGCTGAACTGCTAAGATTTGTTTGACAGGATATTATTTCCAGATACTTTA
AATCATAGTTTCATTTATTTGTCTAGTCATACTGGTAAGCTAGGATATCT
AATAAGACAGGTGAAAAACACTAAACAAACAAATAAACATTGACCTGTTA
GTACTTTATATTTTCAGGGAATTTGAGACTAGAAAAAAATCATAGTATCA
ATCATTTTTTAGTTATTTGCGTTGTCTTCATCATTACCAAACTTCAGCCC
CAGGCACCTAGATGTTTTAGAAGAGCAAGTATGCAGCTGGTTCATTTCAA
CTGTGAAATAGCAGTGTGCTTTGCAGCCTGTTGAGCATAGCATCTAGGCT
GTCTATTAGTAAAGCATACCCTTATATGCCCTGCTGATACCCTAGTATAA
AATGAATAAATCTGAGGTGTAGTTAGCTTAACTCTGATATTTACTTACTA
AAAATACTTTCTTCTAGCCTAATGATAGATTACACATAAATATATAACAC
AATGCTTACAAAATATTTTTTCTCCCATTGAAAATTTTTATATCTTATTT
CTTCACATAAGATACTTTTTGCTATGTATCCATGGTCCTTGTTTCCTCCT
ATAAATGTTATATTTTCACACAAATTTATCAGGAGTATATAATTGTCTAA
TATTAAAAAAATGTCCAAATTTTAATATTGGGAATGCTGATTTAAATTTA
CTCCAACACCCCCCCAAAGAAGCAAATTGCCAGCTGAACCGATATAATTG
AATTTATGGAAATCTTTGTCTCTGAAAGGTTGGAAAAAAAAAACACTGGG
TGTGGTGGTGGTTTCCCTGTTTCTTATTTGAATAATGAACCCATATAAAA
AAAAATATTTCTTACCACCCTTCATCTGGGGTCTGGATTTTATAGAGTAA
TTGTTAATCCGTATACTTCGTTAAGATAAAAAAACAAAAACCCTTTGTGG
GTCCTCTCTCTTCTCTTCATGGTTATAAAAACCTCTCCGGTAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_j17.g1 MSMg01no107_j17.g1 CHROMAT_FILE:
MSMg01no107_j17.g1 PHD_FILE: MSMg01no107_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:43 2005
         (616 letters)



>mm_chr3_43550319_43551334
          Length = 1016

 Score = 1152 bits (596), Expect = 0.0
 Identities = 611/616 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccactttctctaaatagagtgatagcagtccctgaaagttctctttcactcattcct 60
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 816 aaaccactttctctaaatagagtgctagcagtccttgaaagttctctttcactcattcct 757

                                                                       
Query: 61  caaattccaatttgaatatccatgctcttgagaactaacaaagcatcctcacacaggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 caaattccaatttgaatatccatgctcttgagaactaacaaagcatcctcacacaggact 697

                                                                       
Query: 121 gctgggatgagaaggtcatgcaggccaatagtcagcatattgtgaggcatatcctacaac 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 696 gctgggatgagaaggtcatgcaggtcaatagtcagcatattgtgaggcatatcctacaac 637

                                                                       
Query: 181 atactttctagggtcgttcatattctcatatgggctgaactgctaagatttgtttgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atactttctagggtcgttcatattctcatatgggctgaactgctaagatttgtttgacag 577

                                                                       
Query: 241 gatattatttccagatactttaaatcatagtttcatttatttgtctagtcatactggtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 576 gatattatttccagatactttaaatcatagtttcatttatttgtctagttatactggtaa 517

                                                                       
Query: 301 gctaggatatctaataagacaggtgaaaaacactaaacaaacaaataaacattgacctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 516 gctaggatatctaataagacaggtgaaaaacactaaacaaacaaataaacaatgacctgt 457

                                                                       
Query: 361 tagtactttatattttcagggaatttgagactagaaaaaaatcatagtatcaatcatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagtactttatattttcagggaatttgagactagaaaaaaatcatagtatcaatcatttt 397

                                                                       
Query: 421 ttagttatttgcgttgtcttcatcattaccaaacttcagccccaggcacctagatgtttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttagttatttgcgttgtcttcatcattaccaaacttcagccccaggcacctagatgtttt 337

                                                                       
Query: 481 agaagagcaagtatgcagctggttcatttcaactgtgaaatagcagtgtgctttgcagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agaagagcaagtatgcagctggttcatttcaactgtgaaatagcagtgtgctttgcagcc 277

                                                                       
Query: 541 tgttgagcatagcatctaggctgtctattagtaaagcatacccttatatgccctgctgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgttgagcatagcatctaggctgtctattagtaaagcatacccttatatgccctgctgat 217

                           
Query: 601 accctagtataaaatg 616
           ||||||||||||||||
Sbjct: 216 accctagtataaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)