BAC Information

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BAC

Clone NameMSMg01-108B19
Chromosome3 (Build37)
Map Location 76,240,651 - 76,241,029
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108B19.T7 (MSMg01no108_b19.b1)MSMg01-108B19.TJ (MSMg01no108_b19.g1)
ACCAG321646AG321647
length785714
length of high quality
(start - end)
88 (98 - 185)378 (87 - 464)
definitionCHROMAT_FILE: MSMg01no108_b19.b1 PHD_FILE: MSMg01no108_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:51 2005CHROMAT_FILE: MSMg01no108_b19.g1 PHD_FILE: MSMg01no108_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGCGGCNNNNTTCTATAATTTGCNNCCGCTAAACNACTCCCTATCCCA
ANAGGATNCNCGNAATTCTCAACTGACCTATACCAAATGNCTGAAAAGCA
CCTAAAGAAATGTTCAACATTCTTAGTCATCACGCAAATACAAATCAAAA
TGACCCTTAAATTCATTTTCACATGAATCAAAATGGCTAAAATCAAAAAC
TCANGTGACAATANCTGNACAATATGTGNANAAAGAAGAATACTCCTCCA
TTTCCAANGNNACTGCCCACGGGAGGGGGGTGGGNTTNAAATCATTCTCC
TTGATANGAAAAAAAGGAAGACCTNNNNNNNTCCCTTCTTTTCCCTTTTC
CCAAGTCCCCATCGGTAAAACCTTTAAATTTTTAAATAATAAGGAGATAA
AATGAACAAAGACTCCNCCNNNCNCCCNNNNNNNNTCCCCCCCCCCCCCC
TCCCCATTTTTTCAAACTTTTTATATAAGAAGAAAAAGTAAGCCTAGCTA
GGNNNNNNNNNNNNNTNNNNNNNNNNCCNCCCNTNTNNNCNNCCCCCCCN
CCNCCCCCCCCTTCCTTTCTAACTTTCCCCCCCTCCCCCCCCCCCTCATC
CTCATTTTCTTTTTACCCCCTCCCCCCACACTCCACCTTCCCAATTGTGG
GTGTTGGGGGGGCCTCCCCCNCNTTTCCCCCGTGGGGGGGGGGGGGAAAC
TCACCCACNCCCTTTTCATTATTTTGTTTCAGTTCTTTTTTTCTTTTGTT
TTTCCTTTCCTTTNTTTCTTCTGTTTTTTTTTTTT
CTCTCTTCGTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGAGAGAGTG
AGAGAGAGAGAGAGACAGACGGACAGACAGATAGAGACAGAGAGAGATAG
ACAGAGACAGAGATATATGAACAGACAGATAGATAGGCAGGCAGAGAGAG
ACAGAGGATACCATAAACTGTAAATTAGTGTGAAAATAAAATTTTATATA
GTTTTGTTAGCCCATATATAAATCTTTTATCCATGATTCATAAAATCCTT
TACCAGATAATAATTGGTAACCTTAATACACCGTTTATATGTTTGTTTTT
TAATATACCAACAATTTAAAACAGTGACAATATTTACACACTAAACCTCA
TAAATCAGAAAATTAACACAAAGTAAAGACACAATAGAATCATTTAGTAC
TTCAAAGAAGCAGGGGAAGCAGGAGAAAGAGAAGAAGAATGAGAATGAGA
AGGAGAAATAGAAATACAATAAATCGTTCCCAGAAGCATCCAGCTCTAGA
GTCCTATAAATTTGGCCTAATAGGAAACTGGAGAGCAAGATGGCAGACTA
TTGCCTCCCAAGGTAGAACCTAACACTCACCTTCCCCTTTTTCTCCTTCA
GGCGATATTTTCATAATGCTTCTATAGCTATACCCATGGCTTCCCCGTGT
TTTATCTCCCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_b19.g1 MSMg01no108_b19.g1 CHROMAT_FILE:
MSMg01no108_b19.g1 PHD_FILE: MSMg01no108_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:51 2005
         (378 letters)



>mm_chr3_76240374_76241151
          Length = 778

 Score =  702 bits (363), Expect = 0.0
 Identities = 375/379 (98%), Gaps = 1/379 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagagagagtgagagagagagagagacagacggacagacagatagagacagagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 656 agagagagagagtgagagagagagagagacagacggacagacagacagagacagagagag 597

                                                                       
Query: 61  atagacagagac-agagatatatgaacagacagatagataggcaggcagagagagacaga 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atagacagagacaagagatatatgaacagacagatagataggcaggcagagagagacaga 537

                                                                       
Query: 120 ggataccataaactgtaaattagtgtgaaaataaaattttatatagttttgttagcccat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggataccataaactgtaaattagtgtgaaaataaaattttatatagttttgttagcccat 477

                                                                       
Query: 180 atataaatcttttatccatgattcataaaatcctttaccagataataattggtaacctta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atataaatcttttatccatgattcataaaatcctttaccagataataattggtaacctta 417

                                                                       
Query: 240 atacaccgtttatatgtttgttttttaatataccaacaatttaaaacagtgacaatattt 299
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 416 atacacagtttatatgtttgttttttaatataccaacaatttaaagcagtgacaatattt 357

                                                                       
Query: 300 acacactaaacctcataaatcagaaaattaacacaaagtaaagacacaatagaatcattt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acacactaaacctcataaatcagaaaattaacacaaagtaaagacacaatagaatcattt 297

                              
Query: 360 agtacttcaaagaagcagg 378
           |||||||||||||||||||
Sbjct: 296 agtacttcaaagaagcagg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)