Query= MSMg01no108_f21.b1 MSMg01no108_f21.b1 CHROMAT_FILE:
MSMg01no108_f21.b1 PHD_FILE: MSMg01no108_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:12 2005
(396 letters)
>mm_chr3_115951536_115952332
Length = 797
Score = 669 bits (346), Expect = 0.0
Identities = 374/394 (94%), Gaps = 19/394 (4%)
Strand = Plus / Plus
Query: 4 gaattcttctttgtcct---gctcttcattgtggaaggaagaaaatgtggggttagggcc 60
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttctttgt--taatgctcttcattgtggaaggaagaaaatgtggggttagggcc 261
Query: 61 tattctgtcctggaatttagcccttgaaatgcatttagaagggaggcagatgttatacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tattctgtcctggaatttagcccttgaaatgcatttagaagggaggcagatgttatacag 321
Query: 121 cttaataggcatgcacggaaagaaaaagaagcacaaaagtaaattaggacagcccaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttaataggcatgcacggaaagaaaaagaagcacaaaagtaaattaggacagcccaggat 381
Query: 181 agcagttaggatatatatatatatatatatatatatatttaaattcctgagtggacaata 240
||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 382 agcagttaggatatatatatatatata--------------aattcctgagtggataata 427
Query: 241 tgtggtttcatttaaataagaacacaatctccattaatttaatttgtcaaagcagtaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtggtttcatttaaataagaacacaatctccattaatttaatttgtcaaagcagtaact 487
Query: 301 ccaacacttgcaggcagcgcctaggcaggcatttttagatgcttcagtgctactttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccaacacttgcaggcagcgcctaggcaggcatttttagatgcttcagtgctactttaaaa 547
Query: 361 ctaaaaggagacagtcctgtggagttaattacta 394
||||||||||||||||||||||||||||||||||
Sbjct: 548 ctaaaaggagacagtcctgtggagttaattacta 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 797
Length adjustment: 9
Effective length of query: 387
Effective length of database: 788
Effective search space: 304956
Effective search space used: 304956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_f21.g1 MSMg01no108_f21.g1 CHROMAT_FILE:
MSMg01no108_f21.g1 PHD_FILE: MSMg01no108_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:12 2005
(394 letters)
>mm_chr3_116078307_116079100
Length = 794
Score = 746 bits (386), Expect = 0.0
Identities = 392/394 (99%)
Strand = Plus / Minus
Query: 1 ctagtagctacaaggaaggaagatgtattttctataaagtaagtgtgtggtaaggtaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctagtagctacaaggaaggaagatgtattttctataaagtaagtgtgtggtaaggtaggt 535
Query: 61 ctgtggttgcctttacttgtctgtgttctcgtttgtggaaattagtgagcgatggcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctgtggttgcctttacttgtctgtgttctcgtttgtggaaattagtgagcgatggcatgt 475
Query: 121 aggaacctgcttacttcaaaacaagacctttgcatgcttaagagggatcaattcttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aggaacctgcttacttcaaaacaagacctttgcatgcttaagagggatcaattcttttct 415
Query: 181 cttcttgcaggacaatcttgtcatgtggcatttgtttgcaaagttcaggctaatgtacag 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cttcttgaaggacaatcttgtcatgtggcatttgtttgcaaagttcaggctaatgtacag 355
Query: 241 acaattgaccacaggatctgttctgtaaacacccacctagtggggcaagctcttgtttct 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 acaaatgaccacaggatctgttctgtaaacacccacctagtggggcaagctcttgtttct 295
Query: 301 cctgcattctccaagcaacaactctttggtaaacactggaagagaacaaccagttccttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cctgcattctccaagcaacaactctttggtaaacactggaagagaacaaccagttccttg 235
Query: 361 tttgagtccattgttagttttctcttcttgagta 394
||||||||||||||||||||||||||||||||||
Sbjct: 234 tttgagtccattgttagttttctcttcttgagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
