CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGGTCTTACCACATTCCCCACCATCCTGAAGCAGCTGGTCTGATCG
AAAGATGGAATGGCCTTTTGAAGACACAGTTACAGCGCCAATTAGGTGGT
AACAGCTTGGAAGGCTGGGGTAGAGTTCTTCAGAAGGCAGTATATGCTTT
GAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGGATTCATG
GGTCCAGGAATCAAGGGGTGGAAAAAGGAATAGTTCCACTTACTATCACT
CCTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTCTAGG
TTCTGCTGGCCTAGAAGTTTTGGCTCCAGAGAGGGGAGTGCTCCTACCAG
GAGCTACAACAAACATTCCATTGAACTGGAAGCTCAGACTTCCCCCTGGT
CATTTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAGAAAGAAATAAC
AGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGAGAAATTGGATTAC
CTCTTCACAATGGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGATCCC
TTAGGGCGTCTATTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAA
ACTACAACAGCCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAG
GAATGAAGG

CAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAATTGCCTGAAAACTCTTACAAACC
AGTCATGAACAAAGAATCATGCCAGCATTGCTAATTTTTAAGTGCTGTGC
AATCCACTGCTGTGTTATAATGTCATTTGTTATAATGAAGGATGGCAGTT
CTTCACTGCATGTTGGAAAATTTATCTGCTGGCAACTACCTCATATGTAG
TCATATTAAGAGGAGGGCCTTTAAAAAAACTCTGAATGGGGTTATTGCTT
TTGTAAAGGAAAATGCCCAGTTTCTTGCCTCTTCCTCACACTGAAAGGAC
ATATCAACAAAGGAAACATAACTGAAGCAAAGGGCAGACATTTTTCAGAT
GTTGTCTGCTGGAATTTGTCCTTGGACTTCCTCTTTTCCAGAGTGGTGAC
CAATACATGTCTGCTGCTTATAAATTACCTAGTCTGATAGAGCAATAGGA
ACAGATTAGTCATGATTGTCCCAATGTACTTCTTAAAAAGCATTTGATAG
CATTTAGAATCATTATCTAATCTAACATTGCAATAAAACAGAAAAATAAA
ATTGTATTGATTGTGGCCTACACACACACACACACACATATACACACACA
CACACACACATACTCACACACACACACACACACATATATATATATACATA
TATATATATAA

Query= MSMg01no108_k07.g1 MSMg01no108_k07.g1 CHROMAT_FILE:
MSMg01no108_k07.g1 PHD_FILE: MSMg01no108_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:34 2005
         (638 letters)



>mm_chr3_62846337_62847374
          Length = 1038

 Score =  768 bits (397), Expect = 0.0
 Identities = 409/413 (99%), Gaps = 1/413 (0%)
 Strand = Plus / Minus

                                                                        
Query: 143  gaaaatttatctgctggcaactacctcatatgtagtcatattaagaggagggcctttaaa 202
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 1038 gaaaatttatctgctggcaactacctcatatgtagtcatattaagagaagggccttt-aa 980

                                                                        
Query: 203  aaaactctgaatggggttattgcttttgtaaaggaaaatgcccagtttcttgcctcttcc 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  aaaactctgaatggggttattgcttttgtaaaggaaaatgcccagtttcttgcctcttcc 920

                                                                        
Query: 263  tcacactgaaaggacatatcaacaaaggaaacataactgaagcaaagggcagacattttt 322
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 919  tcacactgaaaggacatatcaaaaaaggaaacataactgaagcaaagggcagacattttt 860

                                                                        
Query: 323  cagatgttgtctgctggaatttgtccttggacttcctcttttccagagtggtgaccaata 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  cagatgttgtctgctggaatttgtccttggacttcctcttttccagagtggtgaccaata 800

                                                                        
Query: 383  catgtctgctgcttataaattacctagtctgatagagcaataggaacagattagtcatga 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  catgtctgctgcttataaattacctagtctgatagagcaataggaacagattagtcatga 740

                                                                        
Query: 443  ttgtcccaatgtacttcttaaaaagcatttgatagcatttagaatcattatctaatctaa 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  ttgtcccaatgtacttcttaaaaagcatttgatagcatttagaatcattatctaatctaa 680

                                                                 
Query: 503  cattgcaataaaacagaaaaataaaattgtattgattgtggcctacacacaca 555
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  cattgtaataaaacagaaaaataaaattgtattgattgtggcctacacacaca 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)