BAC Information

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BAC

Clone NameMSMg01-108K15
Chromosome3 (Build37)
Map Location 58,108,553 - 58,262,864
singlet/doubletdoublet
Overlap geneTsc22d2
Upstream geneLOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream geneD3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108K15.T7 (MSMg01no108_k15.b1)MSMg01-108K15.TJ (MSMg01no108_k15.g1)
ACCAG322050AG322051
length723717
length of high quality
(start - end)
570 (40 - 609)571 (69 - 639)
definitionCHROMAT_FILE: MSMg01no108_k15.b1 PHD_FILE: MSMg01no108_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:36 2005CHROMAT_FILE: MSMg01no108_k15.g1 PHD_FILE: MSMg01no108_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,108,553 - 58,109,118)(58,262,294 - 58,262,864)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
GGCAAGTGTACTCCCCACAGCAGATGATATACCTGAGGTCTTGATGGCAT
TTGCTTAAGTGACAAGTGCAGAGTGTGGAATTGTCAACATGTTGTTTGGC
AGGGTAGTTACAATTCTTCTGAGATCACAGGATTCTGTGTGTCAGACCGT
TTGATTGGAAAAGTCAAGGGTACACTGCCCCATGTTTGGGAATGTTTTTA
AGGCTCACCCTAACTACTTTGTAAATATGATATGGGTTAAAGGTTCATTT
ATATGTGTTATACTAATTAATTAAGCAAGATTGTCCCATGGTAAAAAATC
AAAGCCTCATGGCAAACCAAGAGGAGATCTTTGATGACTTGGTATAAAAA
ATGCTTCAATTATTTGCAGAGGTGTTTTTAGCTCACACATAATATTTTAA
CTTTTTATGGATGTATACAACTCTGCACATTTTATAAATGTGAAAAATCA
GGTAGCTCATCACAATCAGAACAGAGAGTAATTCTCTTATTCCCATACTT
GATTCTCCCTCTCCTCCCCCCCTTCATTGTTGTGGAGATAGGGTATGCGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTTTCCTCCCTTTTCCCC
CTTTTCCCCTTTCCCCCTCTTCCCTCCTTTTTTTCCCCCCTTTTCTCCCC
TTTTTTCCCCCTCTTCCCCCCCT
GATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTATTCTGGTAGACCTATGTACTTTGACTAT
AGGTTACTTGCTGGCAGACAATCACCTAAGAAAAGCATGTTTTTCCTGAG
AATAATCAGTTGTCTGGCTATTAGAGATACCAAATTCAAAAAATACCCGA
GCATTTATGACACAGAAGATTAAATAATTGTTTTCTATAATTTATATCCT
CCTATTGTTTAAGTAGTAAACATAGCAATAATCTATACATATACTCACTT
ATTAGTATTTTTATAGATTTTTGAAAGGCAGAATTAGTTTAAACTTTTTG
TTTTGAAATAGTCTTGTAAAAGAAATCTGATACTTCTTTGAGTTAACATG
AGGTCTTTAAATATAATTTTGGAATAAAACATTACTTACAAAGTATACTA
TAGCTGAAAAGAATTTGGGATGTAAAATATCTGAAGACTACTTTTCTTTG
AATGGTATGGACTATTAGAAATATGCCAGGTTGAGGTTCAGAACCATTCT
TTTCCATGTACCTCTGAGATTATAATCCAAGGAGGCCTGGCTATCATGCC
AGGGTCTGCTACTCACTCATTTATTTAATGTCTCTGGACCTCAGTTTCCC
TATCTGTAAAATGAATGGGGTCAGTCCCTAAGCTTCAATGTACTTGGCCA
CTTTGGTACTTTCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_k15.b1 MSMg01no108_k15.b1 CHROMAT_FILE:
MSMg01no108_k15.b1 PHD_FILE: MSMg01no108_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:36 2005
         (570 letters)



>mm_chr3_58108349_58109318
          Length = 970

 Score = 1079 bits (558), Expect = 0.0
 Identities = 564/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccggcaagtgtactccccacagcagatgatatacctgaggtcttgatggcatttg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccggcaagtgtagtccccacagcagatgatatacctgaggtcttgatggcatttg 264

                                                                       
Query: 65  cttaagtgacaagtgcagagtgtggaattgtcaacatgttgtttggcagggtagttacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttaagtgacaagtgcagagtgtggaattgtcaacatgttgtttggcagggtagttacaa 324

                                                                       
Query: 125 ttcttctgagatcacaggattctgtgtgtcagaccgtttgattggaaaagtcaagggtac 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttctgagatcacaggattctgagtgtcagaccgtttgattggaaaagtcaagggtac 384

                                                                       
Query: 185 actgccccatgtttgggaatgtttttaaggctcaccctaactactttgtaaatatgatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgccccatgtttgggaatgtttttaaggctcaccctaactactttgtaaatatgatat 444

                                                                       
Query: 245 gggttaaaggttcatttatatgtgttatactaattaattaagcaagattgtcccatggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggttaaaggttcatttatatgtgttatactaattaattaagcaagattgtcccatggta 504

                                                                       
Query: 305 aaaaatcaaagcctcatggcaaaccaagaggagatctttgatgacttggtataaaaaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaatcaaagcctcatggcaaaccaagaggagatctttgatgacttggtataaaaaatg 564

                                                                       
Query: 365 cttcaattatttgcagaggtgtttttagctcacacataatattttaactttttatggatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcaattatttgcagaggtgtttttagctcacacataatattttaactttttatggatg 624

                                                                       
Query: 425 tatacaactctgcacattttataaatgtgaaaaatcaggtagctcatcacaatcagaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatacaactctgcacattttataaatgtgaaaaatcaggtagctcatcacaatcagaaca 684

                                                                       
Query: 485 gagagtaattctcttattcccatacttgattctccctctcctcccccccttcattgttgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagagtaattctcttattcccatacttgattctccctctcctcccccccttcattgttgt 744

                                     
Query: 545 ggagatagggtatgcgtgtgtgtgtg 570
           ||||||||||||||||||||||||||
Sbjct: 745 ggagatagggtatgcgtgtgtgtgtg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no108_k15.g1 MSMg01no108_k15.g1 CHROMAT_FILE:
MSMg01no108_k15.g1 PHD_FILE: MSMg01no108_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:36 2005
         (571 letters)



>mm_chr3_58262094_58263064
          Length = 971

 Score = 1089 bits (563), Expect = 0.0
 Identities = 569/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtattctggtagacctatgtactttgactataggttacttgctggcagacaatcaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agtattctggtagacctatgtactttgactataggttacttgctggcagacaatcaccta 712

                                                                       
Query: 61  agaaaagcatgtttttcctgagaataatcagttgtctggctattagagataccaaattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agaaaagcatgtttttcctgagaataatcagttgtctggctattagagataccaaattca 652

                                                                       
Query: 121 aaaaatacccgagcatttatgacacagaagattaaataattgttttctataatttatatc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaaaatacccgagcgtttatgacacagaagattaaataattgttttctataatttatatc 592

                                                                       
Query: 181 ctcctattgtttaagtagtaaacatagcaataatctatacatatactcacttattagtat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 591 ctcctattgtttaagtagtaaacatagcaataatctatacatatactcacttgttagtat 532

                                                                       
Query: 241 ttttatagatttttgaaaggcagaattagtttaaactttttgttttgaaatagtcttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttttatagatttttgaaaggcagaattagtttaaactttttgttttgaaatagtcttgta 472

                                                                       
Query: 301 aaagaaatctgatacttctttgagttaacatgaggtctttaaatataattttggaataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaagaaatctgatacttctttgagttaacatgaggtctttaaatataattttggaataaa 412

                                                                       
Query: 361 acattacttacaaagtatactatagctgaaaagaatttgggatgtaaaatatctgaagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acattacttacaaagtatactatagctgaaaagaatttgggatgtaaaatatctgaagac 352

                                                                       
Query: 421 tacttttctttgaatggtatggactattagaaatatgccaggttgaggttcagaaccatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tacttttctttgaatggtatggactattagaaatatgccaggttgaggttcagaaccatt 292

                                                                       
Query: 481 cttttccatgtacctctgagattataatccaaggaggcctggctatcatgccagggtctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttttccatgtacctctgagattataatccaaggaggcctggctatcatgccagggtctg 232

                                          
Query: 541 ctactcactcatttatttaatgtctctggac 571
           |||||||||||||||||||||||||||||||
Sbjct: 231 ctactcactcatttatttaatgtctctggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)