BAC Information

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BAC

Clone NameMSMg01-108N08
Chromosome3 (Build37)
Map Location 16,876,151 - 16,876,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108N08.T7 (MSMg01no108_n08.b1)MSMg01-108N08.TJ (MSMg01no108_n08.g1)
ACCAG322178AG322179
length712710
length of high quality
(start - end)
503 (47 - 549)474 (81 - 554)
definitionCHROMAT_FILE: MSMg01no108_n08.b1 PHD_FILE: MSMg01no108_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:49 2005CHROMAT_FILE: MSMg01no108_n08.g1 PHD_FILE: MSMg01no108_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTATACGACTCCTATTTCGAGAGGACCGCGGAATCACG
AAATTCTCAGGAAATGGATGGATCTGGAGTATATCATTCTGAGTGATGTA
ACCCATTCACAAAAGAACACACATGATATGCACTCACTGATAAGTGAATA
TTAGCCCAGAAACTTTGGCTACCCAAGATACAATTTGCAAAACACATGAA
ATCCAAGAAGAGGGAAGACCAACTAGTGGATACTTTGTTCCTTCTTAGAA
TGGGTTACAGAGACAAAGTTCAGAGCTAAGAAGGAAGAAAGGACCATCCA
GAGACTGCTGCACCTGGAGACCCATCCCATATTCAACCACCAAACCCAGA
TACTATGCCAGCAAGATTTAGCTGACAGGACCCTGATATAACTATCTCTT
GTGAGGCTATGCCAGTGCCTGGCAAATAGAGAAGTGGATATTCCAGTCAT
CTATTGGATGGAACACAGGGCCCCTAATGAAGAAGTTAAAGTACCCATGG
AGCTAATGGGGTCTGCAAACCTATAGGAAGATCAACTATATGAACTAACC
AGTTATCCCCAGAACTATGTATCTAGTTCCATATGTAACAGAAGATGGCC
TAGCTGGCCATCAATGGAACATTAGGCCCTGAACCTGCAAAGATCATATG
CCCCCCGTACAGGGGATGCCTACGCCCAGCCAACAGGAATGGGCGTGTTG
GGGAACATGACA
AAAAAGACGATGAAGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTAATTTTTATGAAGAAA
AAAATAAACAAAATAATAAGATTTTATTTTTTTAATGTTATATGTCTATT
GTTTGCAAGATGTAGTTACTGGCATTTTTGGGTGTCTTAATTCTTGCCTT
TTCTGTAAATACATGCATTGTATAACCAAATGCATGTATGAAGTGCTCAT
CTATGCATGTGAGCTCAATTATGTATATGTAACTGTTACTGATTTTGTAG
GAAAAAAGGGAGCAGAGAAATTATATAATAATGCTATAACCTTAAAAATT
TAATAAGTAGTTAGTAAAGAAAAATTCACTTTTAATCAGAAAAGCACACC
AAAATAAAATAAAATAAAATGTTTTTACTTGAAAATACTGAAAGATGCTT
TTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATTTG
GTGTTCAAGTTTCAAATTTCCTGCTCCTACAGTCATTTCACCTATGACTG
CTGCGTCACTTGCGCGCCTATGCGCAGTGTTCTGACCTATGAACATCTGA
ATAATTACTATCCTAATGTTCCCTGAAAAAACATAAACCTATACAAAAAG
TCTGAGACAAGCAGCATTCTGTTGTCAGGTAAGCCCATACTGACTCCCAG
GACCGGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_n08.g1 MSMg01no108_n08.g1 CHROMAT_FILE:
MSMg01no108_n08.g1 PHD_FILE: MSMg01no108_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:49 2005
         (474 letters)



>mm_chr3_16875950_16876823
          Length = 874

 Score =  764 bits (395), Expect = 0.0
 Identities = 440/473 (93%), Gaps = 29/473 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaatttttatgaagaaaaaaataaacaaaataataagattttatttttttaatgtta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 202 aattaatttttatgaagaaaaaaataaacaaaataataagatttta-ttttttaatgttg 260

                                                                       
Query: 61  tatgtctattgtttgcaagatgtagttactggcatttttgggtgtcttaattcttgcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtctattgtttgcaagatgtagttactggcatttttgggtgtcttaattcttgcctt 320

                                                                       
Query: 121 ttctgtaaatacatgcattgtataaccaaatgcatgtatgaagtgctcatctatgcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgtaaatacatgcattgtataaccaaatgcatgtatgaagtgctcatctatgcatgt 380

                                                                       
Query: 181 gagctcaattatgtatatgtaactgttactgattttgtaggaaaaaagggagcagagaaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gagctcaattatgtatatgtaactgttactgattttataggaaaaaagggagcagagaaa 440

                                                                       
Query: 241 ttatataataatgctataaccttaaaaatttaataagtagttagtaaagaaaaattcact 300
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 441 ttatataataatgctataaccttaaaaatttaataagtagatagtaaagaaaaattcagt 500

                                                                       
Query: 301 tttaatcagaaaagcacaccaaaataaaataaaataaaatgtttttacttgaaaatactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatcagaaaagcacaccaaaataaaataaaataaaatgtttttacttgaaaatactg 560

                                                                       
Query: 361 aaagatgcttttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatttg 420
           ||||||||||||||||||||||||||                            ||||||
Sbjct: 561 aaagatgcttttaatgtgtgtgtgtg----------------------------catttg 592

                                                                
Query: 421 gtgttcaagtttcaaatttcctgctcctacagtcatttcacctatgactgctg 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtgttcaagtttcaaatttcctgctcctacagtcatttcacctatgactgctg 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)