BAC Information

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BAC

Clone NameMSMg01-108N10
Chromosome3 (Build37)
Map Location 59,987,783 - 59,988,187
singlet/doubletsinglet
Overlap genenone
Upstream geneP2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108N10.T7 (MSMg01no108_n10.b1)MSMg01-108N10.TJ (MSMg01no108_n10.g1)
ACCAG322182AG322183
length719692
length of high quality
(start - end)
523 (43 - 565)405 (83 - 487)
definitionCHROMAT_FILE: MSMg01no108_n10.b1 PHD_FILE: MSMg01no108_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:49 2005CHROMAT_FILE: MSMg01no108_n10.g1 PHD_FILE: MSMg01no108_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCATCTCTCCTACGTGGCCCCTGACTTAGTTACTAGCACCCTGGCTT
CCTGTTGCACATGTCTTCATGTATACAAATTCCATCCCATTCTGTGATCC
ACACAAATTTCATTAACATCTGGCACTTCCTCAGCTGAAATAAGATCTAA
TATTGTCAGATAAAGAGGAAAAGGAAACTCAACACAAAATAAGTTTATCT
CAAGAAAATTTTCTATTGTCTTAATTTTCATTTAATGGGTGTACAACGTT
TTAGGATTTCCCAAATGATGTAAGGATCACACATTAAGTCTTGAGGAACT
CCAGCATTAAAGCCTGGGCAAACAAGGATTCCCTACAAAATAGCTGGCCA
ATGGCGCAAAGGGGGAGACAGCAATATTTTAGAAGGAAAAAAGGAAAAAC
TTTCTAGACTCAAAGCATTGGATGCTGCCGCAGATTTGAGTGTAATGATG
AGAAAAGCCCATTGTTTAAAGAGCAATGCCTGTTAACATTTCAAATGTCC
TGGCCCCTTCTTTTTAAACGTTATTTTTAAAGTTTTTTTTTTTAATTTCA
CACCTATGTACTATAGTCACATCATTTCCTCCCTGCCTCTCCCACTTCTA
GCTTCTCCTGTGTTCTTCCATTCCTCAAATTCTTCTGTAAATTTTTATTA
TAGACCTATTTCCAAACAN
TTCTTCTCTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGGGGGGAATTGGAG
ATGAAGTTCTGACACTCAGAAGGAATTATGGATGAATAAAATTTAGCGCT
TGAATCAATAAGAGTGGATGTTTCTGAGGGAAATTGTGGTAGAAAAGTGC
AGTGGTTTTACTCTGACATTGGATACGAGGAGCGGAGTGAGGACTCAGTA
ACCATTAATCACAGAATTAATCAGTAGAGGTGGTAAAGGTCAGGTGGAAG
GGTCTTTAAGAGAGACAGAAAACTCTCACCCACCACCCTATTCCTGGGCC
TCACATTTGGAACATTTAATATTTGACAAGAAGGTTCTAGGAGCCTCCAC
TTAGAGCCTTCATGCTGTCAATTATTCATAGAACAAAATTTAACTTACCA
CAATTTTAACTGGACATACTTAAACATTCTATTAAAAGTTCGAGAACAGA
TTTTTAAAACTATCGATTATCCTAAGAAATGTATATAAAATGTATACAGA
TGTATACATGTACATAAACTTATATCAACATACATAAAACGTATATCAAA
TGTATATAAATGTATACGTGCATATGACAATGTATATAGAATGTTTATAA
ACTTACGACATTTTAAAAGCTTATAAAGAACATTTTCAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_n10.g1 MSMg01no108_n10.g1 CHROMAT_FILE:
MSMg01no108_n10.g1 PHD_FILE: MSMg01no108_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:49 2005
         (405 letters)



>mm_chr3_59987583_59988387
          Length = 805

 Score =  783 bits (405), Expect = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaggggggaattggagatgaagttctgacactcagaaggaattatggatgaataaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cctaggggggaattggagatgaagttctgacactcagaaggaattatggatgaataaaat 546

                                                                       
Query: 61  ttagcgcttgaatcaataagagtggatgtttctgagggaaattgtggtagaaaagtgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttagcgcttgaatcaataagagtggatgtttctgagggaaattgtggtagaaaagtgcag 486

                                                                       
Query: 121 tggttttactctgacattggatacgaggagcggagtgaggactcagtaaccattaatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggttttactctgacattggatacgaggagcggagtgaggactcagtaaccattaatcac 426

                                                                       
Query: 181 agaattaatcagtagaggtggtaaaggtcaggtggaagggtctttaagagagacagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agaattaatcagtagaggtggtaaaggtcaggtggaagggtctttaagagagacagaaaa 366

                                                                       
Query: 241 ctctcacccaccaccctattcctgggcctcacatttggaacatttaatatttgacaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctctcacccaccaccctattcctgggcctcacatttggaacatttaatatttgacaagaa 306

                                                                       
Query: 301 ggttctaggagcctccacttagagccttcatgctgtcaattattcatagaacaaaattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggttctaggagcctccacttagagccttcatgctgtcaattattcatagaacaaaattta 246

                                                        
Query: 361 acttaccacaattttaactggacatacttaaacattctattaaaa 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acttaccacaattttaactggacatacttaaacattctattaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)