XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
TCTTTCCCCCTACCTGATGTGATTTCCTAAGATATACTTACATGAGCTTG
GTTGTTTCTTCGTTTGTTTTCAACTTAGATACCTCACATTTCTTCATTAG
ATTCAAACTTTTCCTGGCCCCTATAGAATATCACCATAGCCTCTTCTCTG
TGTAGGTCTGGCCCACATTTCAGAAGCTATGATCTGAATCCTTTATTATC
ATGCCACTTTTATCAACCGGTGTTAATGGCTCACAAAGACACATATGATT
GTCTTTAATGTCTCTGATTGGCTATTTAACATTTTGTTAAACTTTTTTGG
GAGAAGAAAATTCGTTAATTGTGCATTTAAAACTTATTCAAATATGTATG
TTTTTTTTAAATAGTATTTTCTTCCTTTTATTCAAAGACATTTTATTGTT
AAGTAAAGTAAAGGGAAAGAAAAGGCATGTAGTGGGTCTTATTGTTTTTT
TTTAATTGCTTATTTAAATTGCAGGTAATATTGTAAAATCTGTAAGTTAA
AATGTTTCAGATATACATATTAATACTTTCTATTANAAAAAACTTGCTTA
GATTGCTTACTTCCATAATACATTGTTAAAGACTGGAGCTGTATAAAAGG
CAATAGACCCTAAAATTGTCAATTTAGATAGTGATTAAATATCTTACTAT
ACTTTCTAT

TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAAACTATAG
AGGAAAAAGTAGGGAAAACCCTTGAAGATATAGGCACAGGGGAAAAATTC
CTAAACAGAACAGAAATGGCCTGTGCTCTAAGATCAAGAATTGACAAATG
GGACCTCATAAAACTCTAAAGCTTCTGTAGGGCAAAAGATACTGTCTATA
AGACAAAAAGGCCAACAACAGATTGGGAAAGAATTTTTACCAATCCTAAA
TCTGATAGGGGACTAATATCCAATATATATAAAGAGCTCAAGAAGCTGAA
CTCCAGAAATAAAAATAACCCCACTAAAAATGGGGTGCAGATCTAAACAA
AGAATTCTCAACTGAGGAATACCAAAGGGCTAAGAAACACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCACATCAAAACACCCCTGAGA
TTCCACTTCACACCAGTCAGAGTGGCTAGGATCAAAAATTCAGGTGACAG
CAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCTTTGCTGGT
GGGATTGCAAGCTGGTACAACCACTCTGAAAATCAGTCTGGGGGTTCCTC
AGAAAACTGTACATAGTACTCCTGCTAGGTCCAGCAATACCTCTCCTTGG
CATATACCCT

Query= MSMg01no108_o12.b1 MSMg01no108_o12.b1 CHROMAT_FILE:
MSMg01no108_o12.b1 PHD_FILE: MSMg01no108_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:55 2005
         (671 letters)



>mm_chr3_5911362_5912432
          Length = 1071

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/665 (99%), Gaps = 2/665 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctttcc-ccctacctgatgtgatttcctaagatatacttacatgagcttggtt 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctttccaccctacctgatgtgatttcctaagatatacttacatgagcttggtt 266

                                                                       
Query: 66  gtttcttcgtttgttttcaacttagatacctcacatttcttcattagattcaaacttttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtttcttcgtttgttttcaacttagatacctcacatttcttcattagattcaaacttttc 326

                                                                       
Query: 126 ctggcccctatagaatatcaccatagcctcttctctgtgtaggtctggcccacatttcag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctggcccctatagaatatcaccatagcctcttctctgtgtaggtctggcccacatttcag 386

                                                                       
Query: 186 aagctatgatctgaatcctttattatcatgccacttttatcaaccggtgttaatggctca 245
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagctatgatctgaatcttttattatcatgccacttttatcaaccggtgttaatggctca 446

                                                                       
Query: 246 caaagacacatatgattgtctttaatgtctctgattggctatttaacattttgttaaact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaagacacatatgattgtctttaatgtctctgattggctatttaacattttgttaaact 506

                                                                       
Query: 306 tttttgggagaagaaaattcgttaattgtgcatttaaaacttattcaaatatgtatgttt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttttgggagaagaaaattcgttaattgtgcatttaaaacttattcaaatatgtatgttt 566

                                                                       
Query: 366 tttttaaatagtattttcttccttttattcaaagacattttattgttaagtaaagtaaag 425
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttttaatagtattttcttccttttattcaaagacattttattgttaagtaaagtaaag 626

                                                                       
Query: 426 ggaaagaaaaggcatgtagtgggtcttattgtttttttttaattgcttatttaaattgca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggaaagaaaaggcatgtagtgggtcttattgtttttttttaattgcttatttaaattgca 686

                                                                       
Query: 486 ggtaatattgtaaaatctgtaagttaaaatgtttcagatatacatattaatactttctat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggtaatattgtaaaatctgtaagttaaaatgtttcagatatacatattaatactttctat 746

                                                                       
Query: 546 tanaaaaaacttgcttagattgcttacttccataatacattgttaaagactggagctgta 605
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ta-aaaaaacttgcttagattgcttacttccataatacattgttaaagactggagctgta 805

                                                                       
Query: 606 taaaaggcaatagaccctaaaattgtcaatttagatagtgattaaatatcttactatact 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 taaaaggcaatagaccctaaaattgtcaatttagatagtgattaaatatcttactatact 865

                
Query: 666 ttcta 670
           |||||
Sbjct: 866 ttcta 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)