BAC Information

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BAC

Clone NameMSMg01-108P03
Chromosome3 (Build37)
Map Location 14,130,480 - 14,130,651
singlet/doubletsinglet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108P03.T7 (MSMg01no108_p03.b1)MSMg01-108P03.TJ (MSMg01no108_p03.g1)
ACCAG322255AG322256
length743726
length of high quality
(start - end)
354 (53 - 406)265 (77 - 341)
definitionCHROMAT_FILE: MSMg01no108_p03.b1 PHD_FILE: MSMg01no108_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:58 2005CHROMAT_FILE: MSMg01no108_p03.g1 PHD_FILE: MSMg01no108_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGTTTTGCCTTTCTGGAGGTCCTGAGTTCAAACCCCA
GGAATCACAAGGTGGCTCACAACCATCTGTAACATGATCTGATGCCCTCT
CCTGGAGTGTCTGAAGACAGCTACAGTGTAATTACATATAATAAATAAAT
AAATCTTTTTAAAAAAAAAAAAAGAAAAGAAAAGTTATTATTATTATTAT
TATTATTATTATTATTATTATTATTAAATCTAAGCTCCATTCACAGAATG
CAAACAAAGATTCACAGGCATAAATCAATTTGTGACTTACCTGGGTCTTA
TGACCAGTTGTCAGGTTTCCCTCACAGCTGTATTCCTGGCTGCCCTGAAG
TGGGACTACTAGGCTATTTTTAGATAATGAGAACATTTGGGGACTAGAAT
TGTGGCTGAGGCTCTTATTTGGAACATAAAGTTCCTGGCTAGAACCTATG
GTTCTTGACCTAAGTAATTAAAGTACATAGCAGTCTGCCTATTCTTTCGA
CTCTTGCCTATAATTGGAAACCTATTTCCTTAGCCAAGCTATGGAATATT
TCTAAGCCCAATCCACATCCGGTTATTTCACCCATGTTTTACTATATCCT
CATTGTATTATAAGAGGAGTTCTGTAACTCTTATTTTTTATACGGAATAT
ACTCTGGATACACTCAACTAAAATTCCTTCTCCCTGAAATTTT
TCTATCGATGATGTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTT
TTAATAGGGTTATTTGATTTTCTGGAGTCCAGCTTCTTGAGTTCTTTGTA
TATTTTGAATGTTAGTCCTCTATTTGATTTAGTATTGGTAAAGATCCTTT
CCCAATCTGTTTGTGGACTTTTGTCTTATTGACAGTGTTTTTCTCAGCTT
CTAAAGATATGATCATGTAGTTTTTGTCTCTGAGTTTGTTTATATAGTAG
ATTATGTTGATGGATTTCTGTATATTAAGCCATCCTTGCATCCTTGGGAT
GAAGCCTACTTGATCATGATGTACGGCCGTCTTGACGTGTTCTTGGATTC
CGCTATGTGAGAAATTTTTTGAGTATTTTCATCGATATTCATCCGGCAAT
TTGTTCTGAATTTCTCTTTTCTTGTTGCTCTTTTGCGTGCTTTACGCTTA
ACAGCATCGTGTTTTTATATAACGACCGCCTCCGATCACCTTCTGCTTTT
TATGTTTTTTATTTCAGAATTTCCTTTATTAGTTCTGACTTGTTATTATG
CATAGTCCTATTTCCCTTACTCTTGCACTTGATTCCTGTCGTCTATTTGC
TCACTATCCTTCCCCCCATGACCCATCCATTTTGTATCTTTTTCCCTTAA
CCCCCCCCTTTTTTTTTTTCATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_p03.b1 MSMg01no108_p03.b1 CHROMAT_FILE:
MSMg01no108_p03.b1 PHD_FILE: MSMg01no108_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:58 2005
         (354 letters)



>mm_chr3_14130098_14130851
          Length = 754

 Score =  311 bits (161), Expect = 3e-89
 Identities = 170/173 (98%), Gaps = 2/173 (1%)
 Strand = Plus / Plus

                                                                       
Query: 183 ttattattattattattattattattattattattattattaaatctaagctccattcac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttattattattattattattattattattattattattattaaatctaagctccattcac 442

                                                                       
Query: 243 agaatgcaaacaaagattcacaggcataaatcaatttgtgacttacctgggtcttatgac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaatgcaaacaaagattcacaggcataaatcaatttgtgacttacctgggtcttatgac 502

                                                                
Query: 303 ca-gttgtcaggtttccctcacagctgtattcctggctgccctgaagtgggac 354
           || || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 503 caagt-gtcaggtttccctcacagctgcattcctggctgccctgaagtgggac 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)