ACGATGAGCTTGTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTGGAGTTATCACTATACAAGTCTTCAAGAT
GTACTATAGAGTAATATTAATTAAAAATGCATGGCATTGGCATAAAAAGA
GACAAGTTGATCAATGAAATATAATCATATGGGAAGATCCAGACACAAAC
CCTAAGACCTAGTCACACTTGAATTCTCACATATACGTCCCCACCTCTCT
GCATTATTAAGATCGCCCTTTTTTCCCTTGTTGTTCCCATTCATTTGATT
ACACACTTGCCCCACCATGCATACACCTCATATACTCACCATTTCTGTTT
TATTTTATTATTAACCACAAAACACCATAAACCTTTTTTACTTCCCACCC
CCACCCATCTATCCAGAGTCCCTCTGCATATCGTTTTTTTTTACCTTACA
GAACACCCTCTTAAATCCTTCCGCCTTACTTTCAACCCGTTTTACCCCTT
CTTTCCTCTTTTCCCCTCCTTTCCCCTATTCTTTTTTTTTATGTAACCAT
ACGCTCCCGTTTACCTTCTTTAACTTGACTCTTCCCTCCATATTTTCCTT
TTCTCCCCCCCCCCCCCTTTCCCGTTTCTTCCCCTTTTTCCCCCTTCCTT
GTCCCTTCCACAACCCCCCGCTTTTTCTTTTCCACATTCTTTTTTTTCTT
TTTCTTTTTCCCTTTTTCCCATCCCCCCCCCTTCCCTCCTTTCCCCCCCC
TCCATTCCTTTTCCCA

TTTCTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTGCCCTCACATG
GTCCTCAAATGTAGGAAAGCTCTCAGGCAGCCAAGGTATTGTTAACCTTG
TCATTTACCCAAAGTGATAAGTACTTTCATTTTTAAACTGGCTCCTGTCA
GCTGGTATTTAGAATGAGAGAAGTCTACTGTTGCCTCTCAATCAAAAGAA
ACACGTTAATAAGAGATTACCCAATGCCTGTTGTCCATTCTGAAGCAACG
AGATATAGAAGAATGTGTGCCCCACAAAGAATACGAAGGCAGAATTCACT
TAGGCGATCCTGCCAGCTCCCTGGTGGTTAATGAATGGCAGCAAGACTCT
GCAGTGTTTTCAGTTGGAATGGGCACCGCTCTCATTTGTGCTTTACCTTA
TAAACTTTTAACTGCTTCCAGGACGATCATGGTTGATTTGGCACACCCGC
TTCCACTCTGCTCAGGCTCATATGAGTGATGCTATCGGACTGCCTGACAC
TAGAACAGTGTTGTTATTGCAAGCTTATTATGGGCTCCATTATTAACTTA
TTTTCTTTGGCCTTTTACTGAGGATAGGAAAATCCACTTTCCTTCAACAT
TCACTTAATATACACTGTGCAAAAACAATGATGCCTAAAGCTCCGAGTGT
ATAGAATGTCAAGCTCCTTTGTTTCCCCCA

Query= MSMg01no109_h14.g1 MSMg01no109_h14.g1 CHROMAT_FILE:
MSMg01no109_h14.g1 PHD_FILE: MSMg01no109_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:43 2005
         (537 letters)



>mm_chr3_29903676_29904612
          Length = 937

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctgccctcacatggtcctcaaatgtaggaaagctctcaggcagccaaggtattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tctcctgccctcacatggtcctcaaatgtaggaaagctctcaggcagccaaggtattgtt 678

                                                                       
Query: 61  aaccttgtcatttacccaaagtgataagtactttcatttttaaactggctcctgtcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaccttgtcatttacccaaagtgataagtactttcatttttaaactggctcctgtcagct 618

                                                                       
Query: 121 ggtatttagaatgagagaagtctactgttgcctctcaatcaaaagaaacacgttaataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggtatttagaatgagagaagtctactgttgcctctcaatcaaaagaaacacgttaataag 558

                                                                       
Query: 181 agattacccaatgcctgttgtccattctgaagcaacgagatatagaagaatgtgtgcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agattacccaatgcctgttgtccattctgaagcaacgagatatagaagaatgtgtgcccc 498

                                                                       
Query: 241 acaaagaatacgaaggcagaattcacttaggcgatcctgccagctccctggtggttaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acaaagaatacgaaggcagaattcacttaggcgatcctgccagctccctggtggttaatg 438

                                                                       
Query: 301 aatggcagcaagactctgcagtgttttcagttggaatgggcaccgctctcatttgtgctt 360
           ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||
Sbjct: 437 aatggcagcaagactctgcagtgttttcagttggaatgggcattgttctcatttgtgctt 378

                                                                       
Query: 361 taccttataaacttttaactgcttccaggacgatcatggttgatttggcacacccgcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taccttataaacttttaactgcttccaggacgatcatggttgatttggcacacccgcttc 318

                                                                       
Query: 421 cactctgctcaggctcatatgagtgatgctatcggactgcctgacactagaacagtgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cactctgctcaggctcatatgagtgatgctatcggactgcctgacactagaacagtgttg 258

                                                                    
Query: 481 ttattgcaagcttattatgggctccattattaacttattttctttggccttttactg 537
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257 ttattgcaagcttattatgggctcaattattaacttattttctttggccttttactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)