BAC Information

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BAC

Clone NameMSMg01-109J06
Chromosome3 (Build37)
Map Location 68,800,498 - 68,800,979
singlet/doubletsinglet
Overlap geneIft80
Upstream geneEG208426, EG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik
Downstream geneSmc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109J06.T7 (MSMg01no109_j06.b1)MSMg01-109J06.TJ (MSMg01no109_j06.g1)
ACCAG322727AG322728
length716718
length of high quality
(start - end)
172 (87 - 258)484 (86 - 569)
definitionCHROMAT_FILE: MSMg01no109_j06.b1 PHD_FILE: MSMg01no109_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:51 2005CHROMAT_FILE: MSMg01no109_j06.g1 PHD_FILE: MSMg01no109_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAGCCNNNATATCTAAAATTGCGGCCGCTAAACGACTTCTATTGTCAG
AGAATCCGCGGAATTCACTATGTAGTCCCGTCTGGCCTCACCGCCCAAGT
GCTGAAATTAAAGATCCCATACCTGGCATCAAAAAGTATGAGTGCTTCTT
CTCCATGTATGTCTGTGCACTGTGTATGCTTGGTGCTGCTGAAAGCCGGA
AGAGGGAGTTGGATCCCCTGGGATTGGAGTGGCAGATGGTTATAAGCAGC
TGTGTGGGTACTGAGAATTGACCTCAATTCCTTTGGAAGAGCAGCCCGAG
ATTTTAACTGCTGAGTCATTCTCCAGGCCCAAGGATTTTTTTCTGTATCT
TGGCCTAACTGAAATACAACGACATCTTTTTTTCCCCCCCCCCCCCTCAT
CCTAGTCCATGACAAAGCACTAGTAGTTTTATTCCTTTGCCAAAAATGCA
CCGTTCACATGGCAACGTGCCCCTATACCCTCACTATCCTTATTGCCTTC
TTTGCCAAGATTATTTTTTTGACCCCTACTTTTCCTCTTTCCATCCTTAC
CTTACGACTTCCCACATTGTCCTTTCACACCTCCCTCCTAACCCTTAATC
CCCTTATCCCCGTCCTATACCCTCACTACCGCCTCTTTCTTTCCCCATAC
TTTTTTCCTTTTTTCTTCCCTTGCCCCCCCCTCCCTTCCCCTATTCCGCC
CCCTCTTTCCTTACCC
ATACACCNNNACCCGATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTGCTTCTGCAA
TTGACAAACCATAGATAGGATATTTACATACTATTTATATTACTATTTAT
AGCAATATACATAATATTTATATTACTAACTACAACCTGAAACCTAATAT
TTAGAATGATGAAATACAATCACATCCATAATAATTTAGATACTTCCTCA
CCAGAAGAAATCATAACCAAACTTTATATATAGTAAGAGCAGGACATGCT
TGCTAATGGTTCACCAGCCTTTCAGAAATAATGATGCCAAATGGTCAGAG
GAAGAGAGCAACAACCTAACACAGGAAAGATTCTCCCTGACAAAGAAAGA
TTTTCGCTATATGTACCAGTTAGCTGAAAACATCTATATGAATTACATCT
AAATGTTGAGCACAGTATTAAATAAGAAAATAAAACAATCTTTTTCCCAC
ATAGCCTATGTGAAGACGTACAGAACAGCCTGAATCTACACTGCCCACGT
GGGTTGGCTAATTTCAATCGTCAAGTAGGGTGGAATGAGGAAAACCTAGC
ACATTAATGGACACATCTAAAGCTGTATCTGTGATGATGTTTCCAGAGGT
TTATCCGAGAAAGAAAGTTCCACCTTAAATGTCGGCTTGTGGTCCTTCTT
GTGGCTGGTATCACAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_j06.g1 MSMg01no109_j06.g1 CHROMAT_FILE:
MSMg01no109_j06.g1 PHD_FILE: MSMg01no109_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:51 2005
         (484 letters)



>mm_chr3_68800298_68801179
          Length = 882

 Score =  890 bits (460), Expect = 0.0
 Identities = 478/484 (98%), Gaps = 2/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttgcttctgcaattgacaaaccatagataggatatttacatactatttatattacta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttgcttctgcaattgacaaaccat-gataggatatttacatactatttatattacta 259

                                                                       
Query: 61  tttatagcaatatacataatatttatattactaactacaacctgaaacctaatatttaga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttatagtaatatacataatatttatattactaactacaacctgaaacctaatatttaga 319

                                                                       
Query: 121 atgatgaaatacaatcacatccataataatttagatacttcctcaccagaagaaatcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgatgaaatacaatcacatccataataatttagatacttcctcaccagaagaaatcata 379

                                                                       
Query: 181 accaaactttatatatagtaagagcaggacatgcttgctaatggttcaccagcctttcag 240
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 380 accaaactttatatatagtaagagcagtacatgcttgctaatggttcaccagccattcag 439

                                                                       
Query: 241 aaataatgatgccaaatggtcagaggaagagagcaacaacctaacacaggaaagattctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaataatgatgccaaatggtcagaggaagagagcaacaacctaacacaggaaagattctc 499

                                                                       
Query: 301 cctgacaaagaaagattttcgctatatgtaccagttagctgaaaacatctatatgaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctgacaaagaaagattttcgctatatgtaccagttagctgaaaacatctatatgaatta 559

                                                                       
Query: 361 catctaaatgttgagcacagtattaaataagaaaataaaacaatctttttcccacatagc 420
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catctaaatgttga-cacagttttaaataagaaaataaaacaatctttttcccacatagc 618

                                                                       
Query: 421 ctatgtgaagacgtacagaacagcctgaatctacactgcccacgtgggttggctaatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctatgtgaagacgtacagaacagcctgaatctacactgcccacgtgggttggctaatttc 678

               
Query: 481 aatc 484
           ||||
Sbjct: 679 aatc 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 882
Length adjustment: 10
Effective length of query: 474
Effective length of database: 872
Effective search space:   413328
Effective search space used:   413328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)