BAC Information

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BAC

Clone NameMSMg01-109N21
Chromosome3 (Build37)
Map Location 81,908,058 - 81,908,246
singlet/doubletsinglet
Overlap geneGucy1a3
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109N21.T7 (MSMg01no109_n21.b1)MSMg01-109N21.TJ (MSMg01no109_n21.g1)
ACCAG322944AG322945
length721723
length of high quality
(start - end)
196 (48 - 243)282 (78 - 359)
definitionCHROMAT_FILE: MSMg01no109_n21.b1 PHD_FILE: MSMg01no109_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:14 2005CHROMAT_FILE: MSMg01no109_n21.g1 PHD_FILE: MSMg01no109_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACATCTATAATTGCGGCGCTAAACGACTCCTATTTCAAAGAGAGCCGCG
GAATTCTTTAATTGCCTGAAAACCAGACTCTTCTCATTTATCATAAGCTA
TTTCCAGCTATTTTCATGCAGAATTGGAAATGAGGAGACAGTGAATAGGA
AGGCTGGGGAACCGTGATTGGTGGTGAGATCTGACTCCATCTGCAGCCAG
GTAGCCAAGCAACTCTGTGAACAGGCTCCTTCTGGGGGGCGGAGGGCGGT
GGGTGGGGGGAGATACAACATAGGAGTCCTTAATAGAACCAGTGCAACTA
GAAACAGAGGATGACAAGTTTTTCTTTGGCACACACGTTATCTGTGTGAT
GAAAACTGACTTGCTTCTCTCCGTCCCGACAGAGCAGCCGTTCTCCACGG
ACACAGCTAGAAATCAACAGTAAATCCCACAAGAGACCATCTAACGGATC
TGAACTGGTGCCAATTATTTTTATCGGTAATTATTCAAGGGCCTCTTCCT
CACCCTCCCTCAAAGAAAACTCAAAACTCCCTCAAAATTCCTGTAAGAAA
TTTCACAAGCATAAGGTCTTCTATCCTCTTCCTCATAAATAATTAAGGTT
CTGCCCTTTCCCATAAACCTTACATGCTTCCTCTCTTTACTTACTACCCT
TTAAGTTGGACTGAAACTCTGGAGTAACCATCTTCTGTGTCAAGCTCAAC
ATATGATTTCCTTTTTCATCA
NNCCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGTCTCTGTGATGAATTGA
GTTGGAATTTTGATGGGCATTGCATTGAATCTGTAGATTGCTTTTGGCAA
GATGGCCATTTTTACTATGTGAATCCTACAGATCCATGAGTATGGAAGAT
CTTTCTATCTTCTGAGTTCTTCTTTGATTTCTTTCTTCAGAGCCTTGAAG
TTCTTGTCAAATATACCTTTCATTTGCTTGATTATTTTATTTGTGACTAT
TTTGAAGGGTGTTGTTTCCTTATTTTCTTTCTCAGCCCATATATCCTTTG
TGAAGGGGATAGCCTACTGATCATCCTCCCCATTAATTTTTTATTCAGCC
ACTTTGCTGAAGTTGTTTATCAGGTGTAGGAGTTCTCTTGTAGAAGCTTT
TGGCTGTTTATATATATACTATCTTCATGAGATGGGATTTTAGGTCAGAA
TCTTGCTTCTCTGGTGTGTTAGGATATCCAGGGCTTGCTGTAGTAGGAGA
ATTGGGTTCTAATGATATTAAGCAAAACTGGCCTTCCGCTGCTTATTTTT
TTGTACTCTCCTTTCTGCATCTGGTAATCTCTGGTGTTAAATGGACTTGC
TATCTTGAACTGAAGACTTTTCCCTTTTGGTGACCTGGTTAAGATGAGCC
CCCTTGAGACAAGTTTTCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_n21.b1 MSMg01no109_n21.b1 CHROMAT_FILE:
MSMg01no109_n21.b1 PHD_FILE: MSMg01no109_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:14 2005
         (196 letters)



>mm_chr3_81907855_81908451
          Length = 597

 Score =  313 bits (162), Expect = 4e-90
 Identities = 182/192 (94%), Gaps = 7/192 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttaa----ttgcctgaaaaccagactcttctcatttatcataagctatttcca 59
           |||||||||||    ||   |||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 gaattctttaaaatgtt---tgaaaaccagacccttctcatttatcataagctatttcca 260

                                                                       
Query: 60  gctattttcatgcagaattggaaatgaggagacagtgaataggaaggctggggaaccgtg 119
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gctattttcatgcagaattggaaatgaggagacagtggataggaaggctggggaaccgtg 320

                                                                       
Query: 120 attggtggtgagatctgactccatctgcagccaggtagccaagcaactctgtgaacaggc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggtggtgagatctgactccatctgcagccaggtagccaagcaactctgtgaacaggc 380

                       
Query: 180 tccttctggggg 191
           || |||||||||
Sbjct: 381 tctttctggggg 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 597
Length adjustment: 8
Effective length of query: 188
Effective length of database: 589
Effective search space:   110732
Effective search space used:   110732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)