Query= MSMg01no110_b18.b1 MSMg01no110_b18.b1 CHROMAT_FILE:
MSMg01no110_b18.b1 PHD_FILE: MSMg01no110_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:34 2005
(669 letters)
>mm_chr3_110492175_110493244
Length = 1070
Score = 855 bits (442), Expect = 0.0
Identities = 445/446 (99%), Gaps = 1/446 (0%)
Strand = Plus / Minus
Query: 225 catgatctaaattgcttttggaattgtaagtattaatatatccttgagcatatgtcctta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 catgatctaaattgcttttggaattgtaagtattaatatatccttgagcatatgtcctta 1011
Query: 285 cttagacattccataatatggtatgtgttttcttggccatcattttcccttccctgattc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 cttagacattccataatatggtatgtgttttcttggccatcattttcccttccctgattc 951
Query: 345 tctagaaacatctttaacaatcataactttaccaatgtctttcaaggcagtcttgacttt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 tctagaaacatctttaacaatcataactttaccaatgtctttcaaggcagtcttgacttt 891
Query: 405 ttcctctcatgttcattaaattccttatcactggtagcaagttctgatcatctgatcatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ttcctctcatgttcattaaattccttatcactggtagcaagttctgatcatctgatcatt 831
Query: 465 tcaaatggcttaaaacaatgaacatttttttcttccatagtgctggaggtcagactataa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tcaaatggcttaaaacaatgaacatttttttcttccatagtgctggaggtcagactataa 771
Query: 525 gcattacgttctgccaaggtagaattcctctcacaggcttcagtaagatctttttttttc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gcattacgttctgccaaggtagaattcctctcacaggcttcagtaagatctttttttttc 711
Query: 585 tttgttttg-tttccttgctttttctaactgattgcatttcttagtgtcaccatacaaac 643
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tttgttttgttttccttgctttttctaactgattgcatttcttagtgtcaccatacaaac 651
Query: 644 atgatgacaaattcttgtttgtttgt 669
||||||||||||||||||||||||||
Sbjct: 650 atgatgacaaattcttgtttgtttgt 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space: 698540
Effective search space used: 698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_b18.g1 MSMg01no110_b18.g1 CHROMAT_FILE:
MSMg01no110_b18.g1 PHD_FILE: MSMg01no110_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:34 2005
(641 letters)
>mm_chr3_110395865_110396909
Length = 1045
Score = 1164 bits (602), Expect = 0.0
Identities = 633/646 (97%), Gaps = 6/646 (0%)
Strand = Plus / Plus
Query: 1 cacagaaaacattatattaactcactgttatttattttcataaaggagaagggtccctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaaaacattatattaactcactgttatttattttcataaaggagaagggtccctgg 260
Query: 61 ataattgaaatccatagataattgagaaactgcatagagcaatatttttcaaattcaacc 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ataattgaaatccatagataattgagaaactgcatagagcaatgtttttcaaattcaacc 320
Query: 121 catagcaaattattttattggcagtattgcctagtaacaaagttttcacatttaaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagcaaattattttattggcagtattgcctagtaacaaagttttcacatttaaatttt 380
Query: 181 gcttttttctctttttcttctcacaaaatggcaaggaaaatacctaaattaacccataag 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttttt-ctctttttcttctcacaaaatggcaaggaaaatacctaaattaacccataag 439
Query: 241 tatcaaaagataaccaagagcagaaagcaaagtctacaggctcctaaatgatggaggcca 300
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 tatcaaaagataaccaagagcggaaagcaaagtctaccggctcctaaatgatggaggcca 499
Query: 301 gatctcggtggctgaagcttttgtggtacaaagtcgatcttgtttggtattgtacttcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatctcggtggctgaagcttttgtggtacaaagtcgatcttgtttggtattgtacttcag 559
Query: 361 taatttcaatattgtatcaaaccaaacagcaggtatttattaatcacctactcccttctt 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taatttcaatattgcatcaaaccaaacagcaggtatttattaatcacctactcccttctt 619
Query: 421 gtgagtagaaaacacagtcatatatccttgctttatctgtcataacactgtatacataca 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgagtagaaaacacagtcatatattcttgctttatctgtcataacactgtatacataca 679
Query: 481 gtcttgtaaaaccgtggctaaactacatgttgaggctcagctagagatttaaaaaaaa-- 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 gtcttgtaaaaccgtggctaaactacatgttgaggctcagctagagattaaaaaaaaaaa 739
Query: 539 ---ggtacctggtttcatgtttttaactttgacaagcaaaatgagtttaataccaaaatt 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaggtacctggtttcatgtttttaactttgacaagcaaaatgagtttaataccaaaatt 799
Query: 596 taaagagaaattgaataattaaagcaatatactgtcaatcagtttc 641
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 800 taaagagaaattgaataattaaagcaatatactgtcaatcggtttc 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1045
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1035
Effective search space: 653085
Effective search space used: 653085
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
