Query= MSMg01no110_f13.b1 MSMg01no110_f13.b1 CHROMAT_FILE:
MSMg01no110_f13.b1 PHD_FILE: MSMg01no110_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:54 2005
(496 letters)
>mm_chr3_102214121_102215016
Length = 896
Score = 874 bits (452), Expect = 0.0
Identities = 482/492 (97%)
Strand = Plus / Plus
Query: 5 gaattcttgtaataccgtgtatctaacaaacaacatatctaaaatatataaagaattttt 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtaaaaacgtgtatctaacaaacaacatatctaaaatatataaagaattttt 264
Query: 65 acagtacaataaaagtcagatcgcatagtatacaaacatacaaatgtcacataaaaccca 124
||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 265 acaatacaataaaagtcagatcgcatagtatacaaacatacgaatgtcaaataaaaccca 324
Query: 125 ttaacaaaagttttcaacttccttactcatggggagaaattcaaatcaaaaccaaagcaa 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaacgaaagttttcaacttccttactcatggggagaaattcaaatcaaaaccaaagcaa 384
Query: 185 agtcattgttgcttgctcattacaaaacctgaaagtttgtttccttaaaaataaaagtaa 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtcattgttgcttgctcattaaaaaacctgaaagtttgtttccttaaaaataaaagtaa 444
Query: 245 aatccccaagtactaaattttagcaagagtatagggcaggtagacctttcaaaattactg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatccccaagtactaaattttagcaagagtatagggcaggtagacctttcaaaattactg 504
Query: 305 gttgacacacaatggtggagccctttggataacaccaagaagtttcttggaaatttaaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttgacacacaatggtggagccctttggataacaccaagaagtttcttggaaatttaaat 564
Query: 365 atgattagccacagaacccaggactcccatgtctaggttttctgtttttgtttttttaag 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgattagccacagaacccagcactcccatgtctaggttttctgtttttgtttttttaag 624
Query: 425 aagtagaaatgttttcatacaaatatttagaagcaattgtttagtactagcgttatccat 484
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 625 aagtagaaatgttttcatacaaatatttagaagtaattgtttagtactagctttatccat 684
Query: 485 tcccactaaata 496
||||||||||||
Sbjct: 685 tcccactaaata 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_f13.g1 MSMg01no110_f13.g1 CHROMAT_FILE:
MSMg01no110_f13.g1 PHD_FILE: MSMg01no110_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:54 2005
(537 letters)
>mm_chr3_102372982_102373918
Length = 937
Score = 955 bits (494), Expect = 0.0
Identities = 527/538 (97%), Gaps = 2/538 (0%)
Strand = Plus / Minus
Query: 1 tgctaaagaggcagcaagctggggctgcattcgtcagttctgtcttcagacttgaggtag 60
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct: 737 tgctaaagaggcagcaagctggggctgtattcgtcaattctgtcttcagacttgcggtag 678
Query: 61 tcagccttgagccttagagctaggatggggctgagggcaatttgcaaacccagcaggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 677 tcagccttgagccttagagctaggatggggctgagggcaatttgcaaaccctgcaggatt 618
Query: 121 gcttggcagcactgaggctactatgaaaccatggtttggcgaacagaaactgaaaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcttggcagcactgaggctactatgaaaccatggtttggcgaacagaaactgaaaattta 558
Query: 181 ctacaattcatgataccaaagtgtaagggctgcagttaagggagacggcaagcagaataa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 557 ctacaattcatgataccaaagtgtaagggctgcagttaagggagacagcaagcagaa-aa 499
Query: 241 aaggaagagatgaaatgcacgaagacgtggggagaaaagaatctgcaggataatacaaac 300
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 aaggaagaggtgaaatgcacgaagatgtggggagaaaagaatctgcaggataatacaaac 439
Query: 301 aaatcattagttaaataaaatagttaaaataaaagattataaaactaaaaccacaaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaatcattagttaaataaaatagttaaaataaaagattataaaactaaaaccacaaagaa 379
Query: 361 aaaagcttataagtaggaaggatgaaaaaagggaggttattgtgagtaggaataacgtgt 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 aaaagcttataagtaggaaggatgaaaaatgggaggttattgtgagtaggaataacgtgt 319
Query: 421 gagtggctccaggagctagtattgataattgcccca-atttgataaaataaagataatgc 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 gagtggctccaggagctagtattgataattgccccacatttgataaaataaagataatgc 259
Query: 480 atagagtcatatatatctaatatatttgctaatgtacgtcaataaaataaatttactt 537
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 258 atagagtcatatatatctaatatatttgctaatgtatgtcaataaaataaatttactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
