Query= MSMg01no110_h19.b1 MSMg01no110_h19.b1 CHROMAT_FILE:
MSMg01no110_h19.b1 PHD_FILE: MSMg01no110_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:05 2005
(648 letters)
>mm_chr3_148187593_148188641
Length = 1049
Score = 1152 bits (596), Expect = 0.0
Identities = 633/646 (97%), Gaps = 3/646 (0%)
Strand = Plus / Plus
Query: 5 gaattctacctgcttctatcagttctacccagtaactgttcataatgtcatctgcagagc 64
||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 205 gaattctacctgctt-tatcagttctacccagtaactgttcatgatggcatctgcagagc 263
Query: 65 catgtttgatagccatggaattacatgggtagagctttgatttctgtccatgtacccaga 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgtttgatagccatggaattccatgggtagagctttgatttctgtccatgtacccaga 323
Query: 125 agagatggaaaccatgcctaagttgatgaatactgagctcagtatttctcaagtctcaag 184
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 324 agagatggaaaccatgcctaagttgatgaggactgagctcagtatttctcaagtctcaag 383
Query: 185 actttggcaccaacttaaggattaaggatttcaacattgtttgaccagaaaataccttcc 244
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 384 actttggcaccaacttcaggatcaaggatttcaacattgtttgacccgaaaataccttcc 443
Query: 245 tgctgaaatcctgcctccttttacagaaatgtctgtttctaagtccataccacctgacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgctgaaatcctgcctccttttacagaaatgtctgtttctaagtccataccacctgacag 503
Query: 305 cattccctttcttctccagaagctgtacacccttcatatctggaggtggatgtcacaagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cattccctttcttctccagaagctgtacacccttcatatctggaggtggatgtcacaagt 563
Query: 365 ctccaactcagactccccctatgcctgcagttgcctgatgaatattgatgggacacatat 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctccaactcagactacccctatgcctgcagttgcctgatgaatattgatgggacacatat 623
Query: 425 ttctcttagtcatttataagatctcaagtaacagatgaatttttctacccctgctgctct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctcttagtcatttataagatctcaagtaacagatgaatttttctacccctgctgctct 683
Query: 485 ctaaactttaggaagtatcaagtgaaccattaagcatctcatgatattcaacttgggaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctaaactttaggaagtatcaagtgaaccattaagcatctcatgatattcaacttgggaga 743
Query: 545 ccatgctgggaacagttgcaacttaatgcctttttaaatatacaactgtgggctgtgtca 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccacgctgggaacagttgcaacttaatgcctttttaaatatacaactgtgggctgtgtca 803
Query: 605 gatcccatcctattacatttttctgccattt--ttttcattttatt 648
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 804 gatcccatcctattacatttttctgccatttctttttcattttatt 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_h19.g1 MSMg01no110_h19.g1 CHROMAT_FILE:
MSMg01no110_h19.g1 PHD_FILE: MSMg01no110_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:05 2005
(611 letters)
>mm_chr3_148291624_148292632
Length = 1009
Score = 1100 bits (569), Expect = 0.0
Identities = 600/611 (98%), Gaps = 2/611 (0%)
Strand = Plus / Minus
Query: 1 tcacattttcagatctctgtggaataagaagcagcaccttgggctgagagcagaaggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tcacattttcagatctctgtggaataagaagcagcaccttgggctgagagcagaaggagg 750
Query: 61 gattatcctcagtgtttgcattccatcacctcacttcctctatctaagtgccacacccta 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gattatcctcagtgtttgcagtccatcacctcacttcctctatctaagtgccacacccta 690
Query: 121 aacagcaccaccagagagggaccaaacacgcgagcctaccgggacatttaacaccctagc 180
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 689 aacagcaccaccagagagggaccaaacacgagagcctaccgggacacttaacaccctagc 630
Query: 181 agaaacattaaatttaccatcgtcacagttcttctgagtttatcggttttgactatattt 240
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct: 629 agaaacattaaatttaccatagtcacagttcttctgagtttatcagttttgactgtattt 570
Query: 241 ttttccaacaaggcccttctagacagaaggccttgaatactgcctttacacagcaatcct 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttt--caacaaggcccttctagacagaaggccttgaatactgcctttacacagcaatcct 512
Query: 301 ttatccttacagtctgctctgttttctgattccctccaagttcatgatgatgtctcatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttatccttacagtctgctctgttttctgattccctccaagttcatgatgatgtctcatgg 452
Query: 361 tgcagtgtttcagataagctatgtcatatctcaatacatgcatcaatacaataatctaga 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 451 tgcagtgtttcagataagctatgtcatatctcaatacatgcatcgatacaataatctaga 392
Query: 421 caaagtacatttgctgttctgtcttctacttatacttctcctgttgtaggatggcattta 480
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 391 caaagtacatttgctgttcggtcttctacttatccttctcctgttgtaggatggcattta 332
Query: 481 atataatactgattatttaatgtgactacagattcagttttctttgcttactatgacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atataatactgattatttaatgtgactacagattcagttttctttgcttactatgacatg 272
Query: 541 tgaccatatctggtcagcagattctcttcagtaattctattaatagcaataattctagtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgaccatatctggtcagcagattctcttcagtaattctattaatagcaataattctagtg 212
Query: 601 gtagcaatggt 611
|||||||||||
Sbjct: 211 gtagcaatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1009
Length adjustment: 10
Effective length of query: 601
Effective length of database: 999
Effective search space: 600399
Effective search space used: 600399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
