BAC Information

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BAC

Clone NameMSMg01-110N07
Chromosome3 (Build37)
Map Location 59,987,733 - 59,988,187
singlet/doubletsinglet
Overlap genenone
Upstream geneP2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110N07.T7 (MSMg01no110_n07.b1)MSMg01-110N07.TJ (MSMg01no110_n07.g1)
ACCAG323655AG323656
length732724
length of high quality
(start - end)
567 (56 - 622)455 (74 - 528)
definitionCHROMAT_FILE: MSMg01no110_n07.b1 PHD_FILE: MSMg01no110_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:32 2005CHROMAT_FILE: MSMg01no110_n07.g1 PHD_FILE: MSMg01no110_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCNCCACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGCCGCGGAATTCAAGGCCCTTCCCTAAACATGATAAAAGCAATCTAC
AGCAAACCAGGAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAAT
CCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTT
TCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAG
ATCAAGGGGATACAATTTGGAAAGGAGGAAGTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAAC
TCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAAC
TCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAA
AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAAT
ATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAAC
TTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGA
TCTCCCATGCTCATGGATTGGCAGGATCCACATTGTAAAAATGGCTATCT
TGCCAAAAGCAATCTACAGATTCCAATGCAATCCCCATCGAAATTCCAAC
TCAATTCTTCAACGAATTAGAAGGAGCAATTC
GATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTAGGGGGGAATTGGAGATGAAGTTC
TGACACTCAGAAGGAATTATGGATGAATAAAATTTAGCGCTTGAATCAAT
AAGAGTGGATGTTTCTGAGGGAAATTGTGGTAGAAAAGTGCAGTGGTTTT
ACTCTGACATTGGATACGAGGAGCGGAGTGAGGACTCAGTAACCATTAAT
CACAGAATTAATCAGTAGAGGTGGTAAAGGTCAGGTGGAAGGGTCTTTAA
GAGAGACAGAAAACTCTCACCCACCACCCTATTCCTGGGCCTCACATTTG
GAACATTTAATATTTGACAAGAAGGTTCTAGGAGCCTCCACTTAGAGCCT
TCATGCTGTCAATTATTCATAGAACAAAATTTAACTTACCACAATTTTAA
CTGGACATACTTAAACATTCTATTAAAAGTTCGAGAAAAGATTTTTAAAA
ATATCGATTATCCTAAGAAATGTATATAAAATGTATATAGATGTATACAT
GCACATATACTTATATAAACCTATATAACATGTACTACAAATGTATATAC
ATGTATACGTGTATATGACACTGTATTTTGCACGCTTTTTTCCCTCTCAC
CCTTTCGATGTTTATAAAGAACTTTTCCCGGTACCCTCATCTAGTTTTGT
TATACGCTCTTCCCACTTACGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_n07.g1 MSMg01no110_n07.g1 CHROMAT_FILE:
MSMg01no110_n07.g1 PHD_FILE: MSMg01no110_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:32 2005
         (455 letters)



>mm_chr3_59987533_59988387
          Length = 855

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaggggggaattggagatgaagttctgacactcagaaggaattatggatgaataaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctaggggggaattggagatgaagttctgacactcagaaggaattatggatgaataaaat 596

                                                                       
Query: 61  ttagcgcttgaatcaataagagtggatgtttctgagggaaattgtggtagaaaagtgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttagcgcttgaatcaataagagtggatgtttctgagggaaattgtggtagaaaagtgcag 536

                                                                       
Query: 121 tggttttactctgacattggatacgaggagcggagtgaggactcagtaaccattaatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tggttttactctgacattggatacgaggagcggagtgaggactcagtaaccattaatcac 476

                                                                       
Query: 181 agaattaatcagtagaggtggtaaaggtcaggtggaagggtctttaagagagacagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agaattaatcagtagaggtggtaaaggtcaggtggaagggtctttaagagagacagaaaa 416

                                                                       
Query: 241 ctctcacccaccaccctattcctgggcctcacatttggaacatttaatatttgacaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctctcacccaccaccctattcctgggcctcacatttggaacatttaatatttgacaagaa 356

                                                                       
Query: 301 ggttctaggagcctccacttagagccttcatgctgtcaattattcatagaacaaaattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggttctaggagcctccacttagagccttcatgctgtcaattattcatagaacaaaattta 296

                                                                       
Query: 361 acttaccacaattttaactggacatacttaaacattctattaaaagttcgagaaaagatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 acttaccacaattttaactggacatacttaaacattctattaaaagttcgagaaaagatt 236

                                              
Query: 421 tttaaaaatatcgattatcctaagaaatgtatata 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tttaaaaatatcgattatcctaagaaatgtatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)